Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
NPHP1O15259 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC18.84■□□□□ 0.61
NPHP1O15259 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
NPHP1O15259 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
NPHP1O15259 CICP11-201ENST00000434745 2827 ntBASIC18.84■□□□□ 0.61
NPHP1O15259 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC18.84■□□□□ 0.61
NPHP1O15259 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NPHP1O15259 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC18.84■□□□□ 0.61
NPHP1O15259 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NPHP1O15259 AL137783.1-201ENST00000623494 1896 ntBASIC18.84■□□□□ 0.61
NPHP1O15259 MYO15B-237ENST00000642007 4893 ntBASIC18.84■□□□□ 0.61
NPHP1O15259 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
NPHP1O15259 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NPHP1O15259 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
NPHP1O15259 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC18.83■□□□□ 0.61
NPHP1O15259 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
NPHP1O15259 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC18.83■□□□□ 0.61
NPHP1O15259 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
NPHP1O15259 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC18.83■□□□□ 0.61
NPHP1O15259 OR2I1P-209ENST00000641730 5365 ntBASIC18.83■□□□□ 0.61
NPHP1O15259 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
NPHP1O15259 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC18.83■□□□□ 0.61
NPHP1O15259 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.61
NPHP1O15259 AL360270.3-201ENST00000609118 1348 ntBASIC18.83■□□□□ 0.61
NPHP1O15259 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
NPHP1O15259 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NPHP1O15259 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NPHP1O15259 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NPHP1O15259 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NPHP1O15259 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
NPHP1O15259 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NPHP1O15259 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NPHP1O15259 RPL17P11-201ENST00000417593 544 ntBASIC18.83■□□□□ 0.6
NPHP1O15259 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NPHP1O15259 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC18.83■□□□□ 0.6
NPHP1O15259 FAM58BP-201ENST00000439056 645 ntBASIC18.83■□□□□ 0.6
NPHP1O15259 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
NPHP1O15259 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC18.83■□□□□ 0.6
NPHP1O15259 RCC2P8-201ENST00000502779 1035 ntBASIC18.83■□□□□ 0.6
NPHP1O15259 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NPHP1O15259 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC18.83■□□□□ 0.6
NPHP1O15259 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC18.83■□□□□ 0.6
NPHP1O15259 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC18.83■□□□□ 0.6
NPHP1O15259 DUX4L46-201ENST00000566845 751 ntBASIC18.83■□□□□ 0.6
NPHP1O15259 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC18.83■□□□□ 0.6
NPHP1O15259 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NPHP1O15259 AP000346.4-201ENST00000614827 381 ntBASIC18.83■□□□□ 0.6
NPHP1O15259 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC18.83■□□□□ 0.6
NPHP1O15259 AC020910.5-201ENST00000623668 1865 ntBASIC18.83■□□□□ 0.6
NPHP1O15259 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC18.83■□□□□ 0.6
NPHP1O15259 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
NPHP1O15259 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NPHP1O15259 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
NPHP1O15259 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC18.83■□□□□ 0.6
NPHP1O15259 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC18.83■□□□□ 0.6
NPHP1O15259 AC097376.2-205ENST00000610159 5334 ntBASIC18.83■□□□□ 0.6
NPHP1O15259 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
NPHP1O15259 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
NPHP1O15259 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
NPHP1O15259 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NPHP1O15259 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NPHP1O15259 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NPHP1O15259 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC18.83■□□□□ 0.6
NPHP1O15259 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
NPHP1O15259 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NPHP1O15259 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
NPHP1O15259 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC18.82■□□□□ 0.6
NPHP1O15259 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NPHP1O15259 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NPHP1O15259 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
NPHP1O15259 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NPHP1O15259 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
NPHP1O15259 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NPHP1O15259 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NPHP1O15259 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC18.82■□□□□ 0.6
NPHP1O15259 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC18.82■□□□□ 0.6
NPHP1O15259 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
NPHP1O15259 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC18.82■□□□□ 0.6
NPHP1O15259 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC18.82■□□□□ 0.6
NPHP1O15259 AC005324.6-201ENST00000587972 613 ntBASIC18.82■□□□□ 0.6
NPHP1O15259 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NPHP1O15259 IRF3-215ENST00000596822 823 ntTSL 3 BASIC18.82■□□□□ 0.6
NPHP1O15259 AC009955.4-201ENST00000597192 544 ntBASIC18.82■□□□□ 0.6
NPHP1O15259 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC18.82■□□□□ 0.6
NPHP1O15259 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NPHP1O15259 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NPHP1O15259 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NPHP1O15259 AL603832.2-201ENST00000566195 2125 ntBASIC18.82■□□□□ 0.6
NPHP1O15259 INE2-201ENST00000630399 1874 ntBASIC18.82■□□□□ 0.6
NPHP1O15259 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NPHP1O15259 AC009093.2-202ENST00000620513 2079 ntBASIC18.81■□□□□ 0.6
NPHP1O15259 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPHP1O15259 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPHP1O15259 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPHP1O15259 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPHP1O15259 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC18.81■□□□□ 0.6
NPHP1O15259 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
NPHP1O15259 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NPHP1O15259 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPHP1O15259 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms