Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 HIST2H2BB-201ENST00000449108 381 ntBASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 AP001002.3-201ENST00000623482 206 ntBASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 KRT8P4-201ENST00000509735 1454 ntBASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
TRAIPQ9BWF2 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
TRAIPQ9BWF2 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.22
TRAIPQ9BWF2 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.22
TRAIPQ9BWF2 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 TPI1-206ENST00000488464 791 ntTSL 5 BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 AC100850.1-201ENST00000506768 649 ntBASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 SLC9A7P1-202ENST00000556476 2239 ntBASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
TRAIPQ9BWF2 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 HNRNPA1P32-201ENST00000396326 963 ntBASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 RN7SKP175-201ENST00000408472 289 ntBASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 SERF2-209ENST00000409646 559 ntTSL 4 BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 HNRNPA1P63-201ENST00000427917 963 ntBASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 AC020914.3-201ENST00000594712 304 ntBASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 NKG7-204ENST00000595217 816 ntTSL 2 BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 AC138696.2-201ENST00000607376 223 ntBASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 AC126365.1-201ENST00000578585 1514 ntBASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 FKBP4P6-201ENST00000457486 1332 ntBASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms