Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 PES1-204ENST00000402284 2144 ntTSL 5 BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 REXO1L4P-201ENST00000605109 1937 ntBASIC13.94□□□□□ -0.18
BEST3Q8N1M1 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 EMC4-209ENST00000559421 497 ntTSL 2 BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 C2orf69P2-201ENST00000562032 1123 ntBASIC13.94□□□□□ -0.18
BEST3Q8N1M1 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 CYGB-203ENST00000589145 788 ntTSL 3 BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 AC004466.1-201ENST00000599515 1080 ntBASIC13.94□□□□□ -0.18
BEST3Q8N1M1 AC244093.1-201ENST00000610837 814 ntBASIC13.94□□□□□ -0.18
BEST3Q8N1M1 AL359258.3-201ENST00000622910 2331 ntBASIC13.94□□□□□ -0.18
BEST3Q8N1M1 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 AC015818.8-201ENST00000587907 1519 ntBASIC13.94□□□□□ -0.18
BEST3Q8N1M1 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
BEST3Q8N1M1 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 TMBIM7P-203ENST00000641617 1718 ntBASIC13.93□□□□□ -0.18
BEST3Q8N1M1 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 RPS3-201ENST00000278572 907 ntTSL 3 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 AC104306.2-201ENST00000451877 341 ntBASIC13.93□□□□□ -0.18
BEST3Q8N1M1 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 RPSAP36-202ENST00000494591 1261 ntBASIC13.93□□□□□ -0.18
BEST3Q8N1M1 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 CD74-212ENST00000524315 584 ntTSL 5 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC13.93□□□□□ -0.18
BEST3Q8N1M1 DUX4L47-201ENST00000566374 394 ntBASIC13.93□□□□□ -0.18
BEST3Q8N1M1 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms