Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC18.86■□□□□ 0.61
NPHP1O15259 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
NPHP1O15259 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC18.86■□□□□ 0.61
NPHP1O15259 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NPHP1O15259 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
NPHP1O15259 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NPHP1O15259 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC18.86■□□□□ 0.61
NPHP1O15259 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
NPHP1O15259 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC18.86■□□□□ 0.61
NPHP1O15259 AC069218.1-201ENST00000435269 762 ntBASIC18.86■□□□□ 0.61
NPHP1O15259 AL353637.1-201ENST00000451571 732 ntBASIC18.86■□□□□ 0.61
NPHP1O15259 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC18.86■□□□□ 0.61
NPHP1O15259 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC18.86■□□□□ 0.61
NPHP1O15259 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC18.86■□□□□ 0.61
NPHP1O15259 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC18.86■□□□□ 0.61
NPHP1O15259 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NPHP1O15259 AC020922.3-201ENST00000595064 547 ntBASIC18.86■□□□□ 0.61
NPHP1O15259 PCBP2-OT1-201ENST00000634357 590 ntBASIC18.86■□□□□ 0.61
NPHP1O15259 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
NPHP1O15259 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
NPHP1O15259 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
NPHP1O15259 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NPHP1O15259 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
NPHP1O15259 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC18.86■□□□□ 0.61
NPHP1O15259 AL136379.1-201ENST00000623471 2642 ntBASIC18.86■□□□□ 0.61
NPHP1O15259 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NPHP1O15259 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC18.85■□□□□ 0.61
NPHP1O15259 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
NPHP1O15259 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NPHP1O15259 AC024909.3-201ENST00000611513 2257 ntBASIC18.85■□□□□ 0.61
NPHP1O15259 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NPHP1O15259 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC18.85■□□□□ 0.61
NPHP1O15259 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
NPHP1O15259 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
NPHP1O15259 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NPHP1O15259 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NPHP1O15259 E2F3P2-201ENST00000447755 1422 ntBASIC18.85■□□□□ 0.61
NPHP1O15259 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC18.85■□□□□ 0.61
NPHP1O15259 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
NPHP1O15259 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC18.85■□□□□ 0.61
NPHP1O15259 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC18.85■□□□□ 0.61
NPHP1O15259 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NPHP1O15259 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NPHP1O15259 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
NPHP1O15259 RN7SKP175-201ENST00000408472 289 ntBASIC18.85■□□□□ 0.61
NPHP1O15259 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
NPHP1O15259 CFL1-214ENST00000534769 758 ntTSL 2 BASIC18.85■□□□□ 0.61
NPHP1O15259 RTN3P1-201ENST00000536295 711 ntBASIC18.85■□□□□ 0.61
NPHP1O15259 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC18.85■□□□□ 0.61
NPHP1O15259 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC18.85■□□□□ 0.61
NPHP1O15259 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC18.85■□□□□ 0.61
NPHP1O15259 AC008805.1-201ENST00000590892 364 ntBASIC18.85■□□□□ 0.61
NPHP1O15259 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC18.85■□□□□ 0.61
NPHP1O15259 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
NPHP1O15259 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC18.85■□□□□ 0.61
NPHP1O15259 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NPHP1O15259 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NPHP1O15259 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
NPHP1O15259 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
NPHP1O15259 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC18.85■□□□□ 0.61
NPHP1O15259 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
NPHP1O15259 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NPHP1O15259 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NPHP1O15259 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
NPHP1O15259 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC18.85■□□□□ 0.61
NPHP1O15259 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NPHP1O15259 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC18.84■□□□□ 0.61
NPHP1O15259 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC18.84■□□□□ 0.61
NPHP1O15259 BLK-205ENST00000529894 2017 ntTSL 5 BASIC18.84■□□□□ 0.61
NPHP1O15259 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
NPHP1O15259 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC18.84■□□□□ 0.61
NPHP1O15259 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC18.84■□□□□ 0.61
NPHP1O15259 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NPHP1O15259 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC18.84■□□□□ 0.61
NPHP1O15259 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NPHP1O15259 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
NPHP1O15259 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
NPHP1O15259 MST1L-201ENST00000442552 2185 ntBASIC18.84■□□□□ 0.61
NPHP1O15259 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
NPHP1O15259 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NPHP1O15259 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
NPHP1O15259 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
NPHP1O15259 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
NPHP1O15259 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
NPHP1O15259 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NPHP1O15259 RN7SKP214-201ENST00000364208 315 ntBASIC18.84■□□□□ 0.61
NPHP1O15259 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NPHP1O15259 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
NPHP1O15259 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC18.84■□□□□ 0.61
NPHP1O15259 UFM1-202ENST00000379649 846 ntTSL 4 BASIC18.84■□□□□ 0.61
NPHP1O15259 PUDPP3-201ENST00000445368 636 ntBASIC18.84■□□□□ 0.61
NPHP1O15259 RPL18P13-201ENST00000478088 569 ntBASIC18.84■□□□□ 0.61
NPHP1O15259 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC18.84■□□□□ 0.61
NPHP1O15259 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC18.84■□□□□ 0.61
NPHP1O15259 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
NPHP1O15259 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC18.84■□□□□ 0.61
NPHP1O15259 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
NPHP1O15259 AL353770.1-201ENST00000614915 403 ntBASIC18.84■□□□□ 0.61
NPHP1O15259 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC18.84■□□□□ 0.61
NPHP1O15259 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms