Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
COL9A1P20849 AC013470.3-201ENST00000420252 1194 ntBASIC15.31■□□□□ 0.04
COL9A1P20849 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC15.31■□□□□ 0.04
COL9A1P20849 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC15.31■□□□□ 0.04
COL9A1P20849 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC15.31■□□□□ 0.04
COL9A1P20849 AP000358.1-201ENST00000456260 156 ntBASIC15.31■□□□□ 0.04
COL9A1P20849 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC15.31■□□□□ 0.04
COL9A1P20849 RN7SL494P-201ENST00000461517 304 ntBASIC15.31■□□□□ 0.04
COL9A1P20849 AC022121.1-201ENST00000484584 579 ntBASIC15.31■□□□□ 0.04
COL9A1P20849 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC15.31■□□□□ 0.04
COL9A1P20849 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC15.31■□□□□ 0.04
COL9A1P20849 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
COL9A1P20849 AC009779.1-201ENST00000551138 283 ntBASIC15.31■□□□□ 0.04
COL9A1P20849 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC15.31■□□□□ 0.04
COL9A1P20849 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL9A1P20849 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
COL9A1P20849 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL9A1P20849 AC027237.1-201ENST00000560942 655 ntBASIC15.31■□□□□ 0.04
COL9A1P20849 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC15.31■□□□□ 0.04
COL9A1P20849 AC133552.4-201ENST00000576103 676 ntBASIC15.31■□□□□ 0.04
COL9A1P20849 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC15.31■□□□□ 0.04
COL9A1P20849 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC15.31■□□□□ 0.04
COL9A1P20849 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC15.31■□□□□ 0.04
COL9A1P20849 AC005014.3-201ENST00000605985 190 ntBASIC15.31■□□□□ 0.04
COL9A1P20849 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.31■□□□□ 0.04
COL9A1P20849 AC079331.1-201ENST00000623200 1200 ntBASIC15.31■□□□□ 0.04
COL9A1P20849 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC15.31■□□□□ 0.04
COL9A1P20849 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL9A1P20849 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL9A1P20849 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL9A1P20849 CLUHP2-201ENST00000426660 1303 ntBASIC15.31■□□□□ 0.04
COL9A1P20849 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL9A1P20849 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL9A1P20849 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.31■□□□□ 0.04
COL9A1P20849 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL9A1P20849 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
COL9A1P20849 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL9A1P20849 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL9A1P20849 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
COL9A1P20849 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
COL9A1P20849 PCDHB19P-201ENST00000570871 2371 ntBASIC15.31■□□□□ 0.04
COL9A1P20849 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.31■□□□□ 0.04
COL9A1P20849 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL9A1P20849 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.3■□□□□ 0.04
COL9A1P20849 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
COL9A1P20849 PRAL-201ENST00000624952 3286 ntBASIC15.3■□□□□ 0.04
COL9A1P20849 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
COL9A1P20849 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL9A1P20849 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
COL9A1P20849 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL9A1P20849 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
COL9A1P20849 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL9A1P20849 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL9A1P20849 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL9A1P20849 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL9A1P20849 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC15.3■□□□□ 0.04
COL9A1P20849 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
COL9A1P20849 BX088651.3-201ENST00000418155 352 ntBASIC15.3■□□□□ 0.04
COL9A1P20849 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL9A1P20849 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
COL9A1P20849 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC15.3■□□□□ 0.04
COL9A1P20849 BTG3P1-201ENST00000435859 716 ntBASIC15.3■□□□□ 0.04
COL9A1P20849 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC15.3■□□□□ 0.04
COL9A1P20849 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC15.3■□□□□ 0.04
COL9A1P20849 AC063952.3-201ENST00000467756 308 ntBASIC15.3■□□□□ 0.04
COL9A1P20849 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC15.3■□□□□ 0.04
COL9A1P20849 RN7SL363P-201ENST00000482412 273 ntBASIC15.3■□□□□ 0.04
COL9A1P20849 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC15.3■□□□□ 0.04
COL9A1P20849 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC15.3■□□□□ 0.04
COL9A1P20849 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC15.3■□□□□ 0.04
COL9A1P20849 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC15.3■□□□□ 0.04
COL9A1P20849 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
COL9A1P20849 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC15.3■□□□□ 0.04
COL9A1P20849 AC100827.2-201ENST00000563214 1194 ntBASIC15.3■□□□□ 0.04
COL9A1P20849 AL590235.1-201ENST00000564650 861 ntBASIC15.3■□□□□ 0.04
COL9A1P20849 AC010632.2-201ENST00000588369 1224 ntBASIC15.3■□□□□ 0.04
COL9A1P20849 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL9A1P20849 MIR6893-201ENST00000613458 69 ntBASIC15.3■□□□□ 0.04
COL9A1P20849 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
COL9A1P20849 AL162426.1-201ENST00000624141 743 ntBASIC15.3■□□□□ 0.04
COL9A1P20849 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC15.3■□□□□ 0.04
COL9A1P20849 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
COL9A1P20849 OR10R2-202ENST00000641067 1132 ntAPPRIS ALT2 BASIC15.3■□□□□ 0.04
COL9A1P20849 CASC19-229ENST00000641418 1373 ntBASIC15.3■□□□□ 0.04
COL9A1P20849 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL9A1P20849 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.3■□□□□ 0.04
COL9A1P20849 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL9A1P20849 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
COL9A1P20849 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.29■□□□□ 0.04
COL9A1P20849 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 AL157414.3-201ENST00000624276 1954 ntBASIC15.29■□□□□ 0.04
COL9A1P20849 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.29■□□□□ 0.04
COL9A1P20849 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms