Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLIP3Q96DZ5 WNT11-204ENST00000621122 789 ntTSL 5 BASIC14.69□□□□□ -0.06
CLIP3Q96DZ5 CR382287.1-201ENST00000623954 586 ntBASIC14.69□□□□□ -0.06
CLIP3Q96DZ5 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC14.69□□□□□ -0.06
CLIP3Q96DZ5 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
CLIP3Q96DZ5 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLIP3Q96DZ5 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLIP3Q96DZ5 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.69□□□□□ -0.06
CLIP3Q96DZ5 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLIP3Q96DZ5 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLIP3Q96DZ5 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CLIP3Q96DZ5 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CLIP3Q96DZ5 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLIP3Q96DZ5 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.69□□□□□ -0.06
CLIP3Q96DZ5 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC14.69□□□□□ -0.06
CLIP3Q96DZ5 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.69□□□□□ -0.06
CLIP3Q96DZ5 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC14.69□□□□□ -0.06
CLIP3Q96DZ5 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
CLIP3Q96DZ5 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.69□□□□□ -0.06
CLIP3Q96DZ5 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.69□□□□□ -0.06
CLIP3Q96DZ5 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 AL138799.1-201ENST00000448213 1675 ntBASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 ACKR1-201ENST00000368121 1240 ntBASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 HLA-V-201ENST00000429037 534 ntBASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 AC106760.1-201ENST00000508690 800 ntBASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 BX539320.1-201ENST00000623759 877 ntBASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.68□□□□□ -0.06
CLIP3Q96DZ5 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 BNIP3P42-201ENST00000454982 569 ntBASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 AC022137.2-201ENST00000503482 481 ntBASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 BNIP3P29-201ENST00000598302 571 ntBASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms