Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 AL136309.1-201ENST00000403917 691 ntBASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 AL008707.1-201ENST00000422498 534 ntBASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 AC253536.4-201ENST00000440539 267 ntBASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 LDHBP1-201ENST00000455730 1119 ntBASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 RPS2P36-201ENST00000456516 831 ntBASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 AC100850.1-201ENST00000506768 649 ntBASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 AC128714.1-201ENST00000637035 887 ntBASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 AC136621.1-201ENST00000624017 2304 ntBASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 AC018735.1-201ENST00000437208 1502 ntBASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 C18orf15-201ENST00000623680 2534 ntBASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 HLA-DQB2-229ENST00000411527 1059 ntBASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 CYP46A4P-201ENST00000414953 267 ntBASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 PTPA-217ENST00000434095 870 ntTSL 2 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 IMP3P2-201ENST00000489760 475 ntBASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 FADS2-212ENST00000522639 360 ntTSL 5 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 FADS2-215ENST00000574708 385 ntTSL 3 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 RPS15-202ENST00000585665 467 ntTSL 3 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 AP001505.2-201ENST00000616815 443 ntBASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 MIR7845-201ENST00000618396 99 ntBASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.1■□□□□ 0.01
HDDC3Q8N4P3 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HDDC3Q8N4P3 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms