Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC15.73■□□□□ 0.11
COL4A4P53420 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC15.73■□□□□ 0.11
COL4A4P53420 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC15.73■□□□□ 0.11
COL4A4P53420 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 MIR3188-201ENST00000583494 85 ntBASIC15.73■□□□□ 0.11
COL4A4P53420 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC15.73■□□□□ 0.11
COL4A4P53420 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC15.73■□□□□ 0.11
COL4A4P53420 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.73■□□□□ 0.11
COL4A4P53420 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 RAN-210ENST00000541630 1475 ntTSL 2 BASIC15.73■□□□□ 0.11
COL4A4P53420 AC003102.2-201ENST00000589195 1469 ntBASIC15.73■□□□□ 0.11
COL4A4P53420 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC15.73■□□□□ 0.11
COL4A4P53420 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC15.73■□□□□ 0.11
COL4A4P53420 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC15.73■□□□□ 0.11
COL4A4P53420 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.73■□□□□ 0.11
COL4A4P53420 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.73■□□□□ 0.11
COL4A4P53420 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC15.73■□□□□ 0.11
COL4A4P53420 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC15.73■□□□□ 0.11
COL4A4P53420 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 AC026320.2-201ENST00000434379 478 ntBASIC15.73■□□□□ 0.11
COL4A4P53420 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC15.73■□□□□ 0.11
COL4A4P53420 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
COL4A4P53420 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC15.73■□□□□ 0.11
COL4A4P53420 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
COL4A4P53420 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC15.73■□□□□ 0.11
COL4A4P53420 ALG3P1-201ENST00000508806 1114 ntBASIC15.73■□□□□ 0.11
COL4A4P53420 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC15.73■□□□□ 0.11
COL4A4P53420 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC15.73■□□□□ 0.11
COL4A4P53420 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 AC020763.4-201ENST00000623414 4170 ntBASIC15.73■□□□□ 0.11
COL4A4P53420 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
COL4A4P53420 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL4A4P53420 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL4A4P53420 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL4A4P53420 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
COL4A4P53420 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL4A4P53420 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL4A4P53420 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.72■□□□□ 0.11
COL4A4P53420 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL4A4P53420 AJ011931.1-201ENST00000618749 2492 ntBASIC15.72■□□□□ 0.11
COL4A4P53420 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL4A4P53420 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL4A4P53420 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.72■□□□□ 0.11
COL4A4P53420 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC15.72■□□□□ 0.11
COL4A4P53420 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.72■□□□□ 0.11
COL4A4P53420 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.72■□□□□ 0.11
COL4A4P53420 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL4A4P53420 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC15.72■□□□□ 0.11
COL4A4P53420 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC15.72■□□□□ 0.11
COL4A4P53420 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL4A4P53420 STK16-203ENST00000409516 895 ntTSL 2 BASIC15.72■□□□□ 0.11
COL4A4P53420 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC15.72■□□□□ 0.11
COL4A4P53420 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC15.72■□□□□ 0.11
COL4A4P53420 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC15.72■□□□□ 0.11
COL4A4P53420 LINC00634-202ENST00000505157 222 ntBASIC15.72■□□□□ 0.11
COL4A4P53420 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC15.72■□□□□ 0.11
COL4A4P53420 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC15.72■□□□□ 0.11
COL4A4P53420 MIR3180-2-201ENST00000581748 88 ntBASIC15.72■□□□□ 0.11
COL4A4P53420 AC011247.3-201ENST00000603297 438 ntBASIC15.72■□□□□ 0.11
COL4A4P53420 RNF146-211ENST00000609447 607 ntTSL 4 BASIC15.72■□□□□ 0.11
COL4A4P53420 AC138466.5-201ENST00000624002 808 ntBASIC15.72■□□□□ 0.11
COL4A4P53420 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.72■□□□□ 0.11
COL4A4P53420 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.72■□□□□ 0.11
COL4A4P53420 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.72■□□□□ 0.11
COL4A4P53420 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
COL4A4P53420 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL4A4P53420 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL4A4P53420 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL4A4P53420 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL4A4P53420 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL4A4P53420 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.71■□□□□ 0.11
COL4A4P53420 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL4A4P53420 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.71■□□□□ 0.11
COL4A4P53420 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL4A4P53420 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL4A4P53420 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC15.71■□□□□ 0.11
COL4A4P53420 TLE1P1-201ENST00000422965 589 ntBASIC15.71■□□□□ 0.11
COL4A4P53420 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms