Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
BRCA1P38398 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
BRCA1P38398 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
BRCA1P38398 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.71■□□□□ 0.43
BRCA1P38398 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
BRCA1P38398 NQO2-204ENST00000380454 851 ntTSL 2 BASIC17.71■□□□□ 0.43
BRCA1P38398 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
BRCA1P38398 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
BRCA1P38398 KRT18P4-201ENST00000422599 1288 ntBASIC17.71■□□□□ 0.43
BRCA1P38398 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
BRCA1P38398 GOLGA6L16P-201ENST00000441780 1299 ntBASIC17.71■□□□□ 0.43
BRCA1P38398 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
BRCA1P38398 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
BRCA1P38398 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC17.71■□□□□ 0.43
BRCA1P38398 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.71■□□□□ 0.43
BRCA1P38398 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
BRCA1P38398 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
BRCA1P38398 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
BRCA1P38398 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
BRCA1P38398 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
BRCA1P38398 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
BRCA1P38398 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
BRCA1P38398 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.42
BRCA1P38398 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
BRCA1P38398 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
BRCA1P38398 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
BRCA1P38398 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BRCA1P38398 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BRCA1P38398 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BRCA1P38398 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
BRCA1P38398 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
BRCA1P38398 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
BRCA1P38398 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC17.7■□□□□ 0.42
BRCA1P38398 AL139384.1-201ENST00000612143 3047 ntBASIC17.7■□□□□ 0.42
BRCA1P38398 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BRCA1P38398 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BRCA1P38398 AL157823.1-201ENST00000403727 628 ntBASIC17.7■□□□□ 0.42
BRCA1P38398 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
BRCA1P38398 AC136604.1-202ENST00000425471 771 ntBASIC17.7■□□□□ 0.42
BRCA1P38398 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC17.7■□□□□ 0.42
BRCA1P38398 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC17.7■□□□□ 0.42
BRCA1P38398 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
BRCA1P38398 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC17.7■□□□□ 0.42
BRCA1P38398 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC17.7■□□□□ 0.42
BRCA1P38398 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC17.7■□□□□ 0.42
BRCA1P38398 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
BRCA1P38398 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BRCA1P38398 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
BRCA1P38398 LINC00528-201ENST00000600723 2160 ntBASIC17.7■□□□□ 0.42
BRCA1P38398 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
BRCA1P38398 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BRCA1P38398 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
BRCA1P38398 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC17.7■□□□□ 0.42
BRCA1P38398 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
BRCA1P38398 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BRCA1P38398 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BRCA1P38398 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BRCA1P38398 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC17.69■□□□□ 0.42
BRCA1P38398 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BRCA1P38398 RN7SL767P-201ENST00000493013 295 ntBASIC17.69■□□□□ 0.42
BRCA1P38398 AC008026.2-201ENST00000495438 348 ntBASIC17.69■□□□□ 0.42
BRCA1P38398 EMC4-208ENST00000559078 599 ntTSL 3 BASIC17.69■□□□□ 0.42
BRCA1P38398 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BRCA1P38398 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC17.69■□□□□ 0.42
BRCA1P38398 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
BRCA1P38398 FKBP4P8-201ENST00000610931 1369 ntBASIC17.69■□□□□ 0.42
BRCA1P38398 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC17.69■□□□□ 0.42
BRCA1P38398 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.69■□□□□ 0.42
BRCA1P38398 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
BRCA1P38398 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.69■□□□□ 0.42
BRCA1P38398 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC17.69■□□□□ 0.42
BRCA1P38398 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
BRCA1P38398 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BRCA1P38398 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BRCA1P38398 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BRCA1P38398 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
BRCA1P38398 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
BRCA1P38398 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
BRCA1P38398 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
BRCA1P38398 OR10N1P-201ENST00000392758 869 ntBASIC17.69■□□□□ 0.42
BRCA1P38398 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
BRCA1P38398 BCRP4-201ENST00000506079 804 ntBASIC17.69■□□□□ 0.42
BRCA1P38398 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.69■□□□□ 0.42
BRCA1P38398 AC010491.1-201ENST00000563101 2797 ntBASIC17.69■□□□□ 0.42
BRCA1P38398 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC17.69■□□□□ 0.42
BRCA1P38398 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
BRCA1P38398 AL591471.1-201ENST00000621855 229 ntBASIC17.69■□□□□ 0.42
BRCA1P38398 AC092135.3-201ENST00000624151 1846 ntBASIC17.69■□□□□ 0.42
BRCA1P38398 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
BRCA1P38398 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC17.68■□□□□ 0.42
BRCA1P38398 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
BRCA1P38398 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
BRCA1P38398 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC17.68■□□□□ 0.42
BRCA1P38398 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
BRCA1P38398 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
BRCA1P38398 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
BRCA1P38398 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
BRCA1P38398 MROH4P-201ENST00000431302 1578 ntBASIC17.68■□□□□ 0.42
BRCA1P38398 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC17.68■□□□□ 0.42
BRCA1P38398 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms