Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
COL5A1P20908 MVK-217ENST00000639206 367 ntTSL 5 BASIC14.14□□□□□ -0.15
COL5A1P20908 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.14□□□□□ -0.15
COL5A1P20908 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
COL5A1P20908 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC14.14□□□□□ -0.15
COL5A1P20908 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
COL5A1P20908 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
COL5A1P20908 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.14□□□□□ -0.15
COL5A1P20908 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
COL5A1P20908 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC14.14□□□□□ -0.15
COL5A1P20908 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 REXO1L2P-201ENST00000425429 2069 ntBASIC14.14□□□□□ -0.15
COL5A1P20908 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.14□□□□□ -0.15
COL5A1P20908 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
COL5A1P20908 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL5A1P20908 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL5A1P20908 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.13□□□□□ -0.15
COL5A1P20908 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.13□□□□□ -0.15
COL5A1P20908 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL5A1P20908 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
COL5A1P20908 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL5A1P20908 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC14.13□□□□□ -0.15
COL5A1P20908 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC14.13□□□□□ -0.15
COL5A1P20908 HIST2H2BA-201ENST00000412169 381 ntBASIC14.13□□□□□ -0.15
COL5A1P20908 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
COL5A1P20908 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL5A1P20908 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC14.13□□□□□ -0.15
COL5A1P20908 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL5A1P20908 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL5A1P20908 RHEB-207ENST00000496004 744 ntTSL 2 BASIC14.13□□□□□ -0.15
COL5A1P20908 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL5A1P20908 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC14.13□□□□□ -0.15
COL5A1P20908 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC14.13□□□□□ -0.15
COL5A1P20908 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
COL5A1P20908 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC14.13□□□□□ -0.15
COL5A1P20908 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC14.13□□□□□ -0.15
COL5A1P20908 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL5A1P20908 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL5A1P20908 AGAP7P-201ENST00000582299 2062 ntBASIC14.13□□□□□ -0.15
COL5A1P20908 AGAP14-201ENST00000624701 2060 ntBASIC14.13□□□□□ -0.15
COL5A1P20908 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
COL5A1P20908 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC14.13□□□□□ -0.15
COL5A1P20908 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL5A1P20908 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL5A1P20908 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.13□□□□□ -0.15
COL5A1P20908 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.13□□□□□ -0.15
COL5A1P20908 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL5A1P20908 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.13□□□□□ -0.15
COL5A1P20908 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL5A1P20908 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC14.13□□□□□ -0.15
COL5A1P20908 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL5A1P20908 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL5A1P20908 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL5A1P20908 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL5A1P20908 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
COL5A1P20908 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL5A1P20908 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.13□□□□□ -0.15
COL5A1P20908 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
COL5A1P20908 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.13□□□□□ -0.15
COL5A1P20908 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC14.13□□□□□ -0.15
COL5A1P20908 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL5A1P20908 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL5A1P20908 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC14.13□□□□□ -0.15
COL5A1P20908 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC14.13□□□□□ -0.15
COL5A1P20908 PPOX-204ENST00000462866 473 ntTSL 5 BASIC14.13□□□□□ -0.15
COL5A1P20908 AL157792.1-201ENST00000488281 530 ntBASIC14.13□□□□□ -0.15
COL5A1P20908 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC14.13□□□□□ -0.15
COL5A1P20908 AC009560.1-201ENST00000620208 434 ntBASIC14.13□□□□□ -0.15
COL5A1P20908 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
COL5A1P20908 AL161773.1-201ENST00000624845 863 ntBASIC14.13□□□□□ -0.15
COL5A1P20908 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.13□□□□□ -0.15
COL5A1P20908 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL5A1P20908 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
COL5A1P20908 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL5A1P20908 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.12□□□□□ -0.15
COL5A1P20908 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL5A1P20908 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC14.12□□□□□ -0.15
COL5A1P20908 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL5A1P20908 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL5A1P20908 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL5A1P20908 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL5A1P20908 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL5A1P20908 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL5A1P20908 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.12□□□□□ -0.15
COL5A1P20908 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
COL5A1P20908 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL5A1P20908 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC14.12□□□□□ -0.15
COL5A1P20908 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL5A1P20908 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms