Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.59□□□□□ -0.07
VMP1Q96GC9 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
VMP1Q96GC9 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VMP1Q96GC9 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.58□□□□□ -0.07
VMP1Q96GC9 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
VMP1Q96GC9 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
VMP1Q96GC9 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.58□□□□□ -0.07
VMP1Q96GC9 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.58□□□□□ -0.07
VMP1Q96GC9 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
VMP1Q96GC9 FGD5P1-202ENST00000614866 2498 ntBASIC14.58□□□□□ -0.07
VMP1Q96GC9 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
VMP1Q96GC9 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
VMP1Q96GC9 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
VMP1Q96GC9 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.07
VMP1Q96GC9 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
VMP1Q96GC9 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
VMP1Q96GC9 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VMP1Q96GC9 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
VMP1Q96GC9 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VMP1Q96GC9 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.58□□□□□ -0.08
VMP1Q96GC9 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC14.58□□□□□ -0.08
VMP1Q96GC9 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
VMP1Q96GC9 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VMP1Q96GC9 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VMP1Q96GC9 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VMP1Q96GC9 AC098614.1-201ENST00000368528 745 ntBASIC14.58□□□□□ -0.08
VMP1Q96GC9 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
VMP1Q96GC9 AL133267.1-201ENST00000398220 340 ntBASIC14.58□□□□□ -0.08
VMP1Q96GC9 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
VMP1Q96GC9 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.58□□□□□ -0.08
VMP1Q96GC9 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.58□□□□□ -0.08
VMP1Q96GC9 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC14.58□□□□□ -0.08
VMP1Q96GC9 AP005018.1-201ENST00000525475 301 ntBASIC14.58□□□□□ -0.08
VMP1Q96GC9 AC005225.4-201ENST00000557330 545 ntBASIC14.58□□□□□ -0.08
VMP1Q96GC9 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VMP1Q96GC9 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.58□□□□□ -0.08
VMP1Q96GC9 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
VMP1Q96GC9 AC006504.5-208ENST00000588784 2401 ntBASIC14.58□□□□□ -0.08
VMP1Q96GC9 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VMP1Q96GC9 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
VMP1Q96GC9 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VMP1Q96GC9 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VMP1Q96GC9 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC14.58□□□□□ -0.08
VMP1Q96GC9 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VMP1Q96GC9 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VMP1Q96GC9 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
VMP1Q96GC9 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VMP1Q96GC9 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.58□□□□□ -0.08
VMP1Q96GC9 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VMP1Q96GC9 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
VMP1Q96GC9 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.58□□□□□ -0.08
VMP1Q96GC9 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VMP1Q96GC9 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.58□□□□□ -0.08
VMP1Q96GC9 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VMP1Q96GC9 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
VMP1Q96GC9 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
VMP1Q96GC9 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VMP1Q96GC9 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.58□□□□□ -0.08
VMP1Q96GC9 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC14.58□□□□□ -0.08
VMP1Q96GC9 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.58□□□□□ -0.08
VMP1Q96GC9 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VMP1Q96GC9 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 AC010327.5-201ENST00000586923 3061 ntBASIC14.57□□□□□ -0.08
VMP1Q96GC9 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 CLK3P2-201ENST00000427566 1453 ntBASIC14.57□□□□□ -0.08
VMP1Q96GC9 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.57□□□□□ -0.08
VMP1Q96GC9 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VMP1Q96GC9 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VMP1Q96GC9 AL121723.1-201ENST00000445194 1519 ntBASIC14.57□□□□□ -0.08
VMP1Q96GC9 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VMP1Q96GC9 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
VMP1Q96GC9 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VMP1Q96GC9 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 AC112693.3-201ENST00000624819 1983 ntBASIC14.57□□□□□ -0.08
VMP1Q96GC9 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VMP1Q96GC9 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VMP1Q96GC9 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 AP006294.1-201ENST00000415407 339 ntBASIC14.57□□□□□ -0.08
VMP1Q96GC9 FAM86LP-201ENST00000478302 853 ntBASIC14.57□□□□□ -0.08
VMP1Q96GC9 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 AC012645.4-201ENST00000610691 1061 ntBASIC14.57□□□□□ -0.08
VMP1Q96GC9 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms