Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 GUK1-206ENST00000366723 845 ntTSL 5 BASIC13.82□□□□□ -0.2
HOXD4P09016 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 BCYRN1-201ENST00000418539 200 ntBASIC13.82□□□□□ -0.2
HOXD4P09016 CNN2P8-201ENST00000421872 913 ntBASIC13.82□□□□□ -0.2
HOXD4P09016 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC13.82□□□□□ -0.2
HOXD4P09016 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC13.82□□□□□ -0.2
HOXD4P09016 PFN1P12-201ENST00000455938 534 ntBASIC13.82□□□□□ -0.2
HOXD4P09016 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC13.82□□□□□ -0.2
HOXD4P09016 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC13.82□□□□□ -0.2
HOXD4P09016 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC13.82□□□□□ -0.2
HOXD4P09016 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC13.82□□□□□ -0.2
HOXD4P09016 AC008687.7-202ENST00000637404 953 ntBASIC13.82□□□□□ -0.2
HOXD4P09016 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
HOXD4P09016 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC13.82□□□□□ -0.2
HOXD4P09016 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC13.82□□□□□ -0.2
HOXD4P09016 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
HOXD4P09016 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
HOXD4P09016 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC13.82□□□□□ -0.2
HOXD4P09016 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.82□□□□□ -0.2
HOXD4P09016 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC13.82□□□□□ -0.2
HOXD4P09016 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
HOXD4P09016 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
HOXD4P09016 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC13.81□□□□□ -0.2
HOXD4P09016 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC13.81□□□□□ -0.2
HOXD4P09016 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
HOXD4P09016 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
HOXD4P09016 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC13.81□□□□□ -0.2
HOXD4P09016 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC13.81□□□□□ -0.2
HOXD4P09016 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC13.81□□□□□ -0.2
HOXD4P09016 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
HOXD4P09016 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC13.81□□□□□ -0.2
HOXD4P09016 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC13.81□□□□□ -0.2
HOXD4P09016 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC13.81□□□□□ -0.2
HOXD4P09016 RPL8-205ENST00000527914 551 ntTSL 3 BASIC13.81□□□□□ -0.2
HOXD4P09016 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC13.81□□□□□ -0.2
HOXD4P09016 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC13.81□□□□□ -0.2
HOXD4P09016 KRT90P-201ENST00000549264 1064 ntBASIC13.81□□□□□ -0.2
HOXD4P09016 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC13.81□□□□□ -0.2
HOXD4P09016 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC13.81□□□□□ -0.2
HOXD4P09016 DUX4L45-201ENST00000566406 1057 ntBASIC13.81□□□□□ -0.2
HOXD4P09016 AC025279.2-201ENST00000569730 653 ntBASIC13.81□□□□□ -0.2
HOXD4P09016 INO80C-210ENST00000590757 595 ntTSL 2 BASIC13.81□□□□□ -0.2
HOXD4P09016 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC13.81□□□□□ -0.2
HOXD4P09016 AL645728.2-202ENST00000641679 227 ntBASIC13.81□□□□□ -0.2
HOXD4P09016 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
HOXD4P09016 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC13.81□□□□□ -0.2
HOXD4P09016 OS9-207ENST00000439210 1946 ntTSL 2 BASIC13.81□□□□□ -0.2
HOXD4P09016 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
HOXD4P09016 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC13.81□□□□□ -0.2
HOXD4P09016 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
HOXD4P09016 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
HOXD4P09016 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC13.81□□□□□ -0.2
HOXD4P09016 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
HOXD4P09016 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD4P09016 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
HOXD4P09016 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC13.8□□□□□ -0.2
HOXD4P09016 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC13.8□□□□□ -0.2
HOXD4P09016 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC13.8□□□□□ -0.2
HOXD4P09016 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
HOXD4P09016 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD4P09016 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
HOXD4P09016 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms