Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 DLG4-206ENST00000485100 1004 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 AC079331.1-201ENST00000623200 1200 ntBASIC11.45□□□□□ -0.58
COL6A5A8TX70 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 CCL24-201ENST00000222902 582 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 PYY2-201ENST00000315776 282 ntBASIC11.45□□□□□ -0.58
COL6A5A8TX70 PIFO-201ENST00000369737 746 ntTSL 2 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 AC098934.1-203ENST00000442868 1262 ntBASIC11.45□□□□□ -0.58
COL6A5A8TX70 STK24P1-201ENST00000455035 1291 ntBASIC11.45□□□□□ -0.58
COL6A5A8TX70 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 LINC02352-201ENST00000557928 468 ntTSL 5 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 AC005746.2-201ENST00000585765 470 ntTSL 5 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 TARM1-202ENST00000616041 1218 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC11.45□□□□□ -0.58
COL6A5A8TX70 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
COL6A5A8TX70 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC11.45□□□□□ -0.58
COL6A5A8TX70 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 AL118522.1-201ENST00000611368 560 ntBASIC11.44□□□□□ -0.58
COL6A5A8TX70 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 AL360270.3-201ENST00000609118 1348 ntBASIC11.44□□□□□ -0.58
COL6A5A8TX70 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 ALOX12P2-203ENST00000570921 1945 ntBASIC11.44□□□□□ -0.58
COL6A5A8TX70 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 HNRNPABP1-201ENST00000406003 734 ntBASIC11.44□□□□□ -0.58
COL6A5A8TX70 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 AC011431.1-201ENST00000512971 230 ntBASIC11.44□□□□□ -0.58
COL6A5A8TX70 RN7SL440P-201ENST00000577855 343 ntBASIC11.44□□□□□ -0.58
COL6A5A8TX70 AC087072.1-201ENST00000603727 421 ntBASIC11.44□□□□□ -0.58
COL6A5A8TX70 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 AC027601.3-201ENST00000622907 509 ntBASIC11.44□□□□□ -0.58
COL6A5A8TX70 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 TKT-202ENST00000423516 2075 ntTSL 2 BASIC11.44□□□□□ -0.58
COL6A5A8TX70 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
COL6A5A8TX70 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms