Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 LINC01513-201ENST00000416930 483 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 LINC02424-201ENST00000548512 1264 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 NAA60-208ENST00000570819 833 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 AC010618.2-201ENST00000596192 460 ntTSL 3 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 DRD5P1-201ENST00000456605 1438 ntBASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS9D1Q9Y2B5 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 AP002414.2-201ENST00000591780 3365 ntBASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 AC023310.3-201ENST00000557027 670 ntBASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 AC100756.1-201ENST00000562736 682 ntBASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 AC138749.3-201ENST00000567691 622 ntBASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 RPAP2P1-201ENST00000603626 1168 ntBASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 AC116165.1-201ENST00000611806 668 ntBASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 LINC00528-201ENST00000600723 2160 ntBASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 AJ011931.1-201ENST00000618749 2492 ntBASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 AL391825.1-201ENST00000457671 1364 ntBASIC15.23■□□□□ 0.03
VPS9D1Q9Y2B5 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 AL360270.3-201ENST00000609118 1348 ntBASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 AC093525.8-201ENST00000624099 1342 ntBASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS9D1Q9Y2B5 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms