Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS9D1Q9Y2B5 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 CLK3P2-201ENST00000427566 1453 ntBASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 RN7SL399P-201ENST00000471648 279 ntBASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 CYMP-203ENST00000474680 1263 ntBASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 INGX-202ENST00000489074 768 ntBASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 GAPDHP40-201ENST00000505218 1006 ntBASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 SPDYE18-201ENST00000510091 1050 ntBASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 HTR4-207ENST00000520514 1236 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 AC068205.1-201ENST00000526615 689 ntTSL 3 BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 AC005498.2-205ENST00000593218 784 ntBASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC15.27■□□□□ 0.04
VPS9D1Q9Y2B5 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.27■□□□□ 0.03
VPS9D1Q9Y2B5 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
VPS9D1Q9Y2B5 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
VPS9D1Q9Y2B5 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
VPS9D1Q9Y2B5 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.27■□□□□ 0.03
VPS9D1Q9Y2B5 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
VPS9D1Q9Y2B5 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS9D1Q9Y2B5 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
VPS9D1Q9Y2B5 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS9D1Q9Y2B5 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS9D1Q9Y2B5 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
VPS9D1Q9Y2B5 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS9D1Q9Y2B5 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
VPS9D1Q9Y2B5 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.27■□□□□ 0.03
VPS9D1Q9Y2B5 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 AC092809.4-201ENST00000420350 1323 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 ACE3P-201ENST00000423435 1973 ntBASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 NUS1P3-201ENST00000423502 862 ntBASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 AL589987.1-201ENST00000453380 819 ntBASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 AC104596.2-201ENST00000512793 793 ntBASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 AC090515.5-201ENST00000560378 526 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 AC093813.1-201ENST00000605066 256 ntBASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 AC099568.2-201ENST00000609194 695 ntBASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS9D1Q9Y2B5 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms