Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 SPDYE17-201ENST00000412399 783 ntBASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 AC015910.1-201ENST00000579400 975 ntBASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 AC138969.3-201ENST00000546612 1459 ntBASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 AC138932.2-201ENST00000548268 1459 ntBASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 AC126755.4-201ENST00000549796 1459 ntBASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
NUDCD3Q8IVD9 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 AL591424.1-201ENST00000442569 1213 ntBASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 AL592309.1-201ENST00000443127 649 ntBASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 AC007787.1-201ENST00000588095 1583 ntBASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
NUDCD3Q8IVD9 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.22■□□□□ 0.03
NUDCD3Q8IVD9 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms