Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC20.8■□□□□ 0.92
MSH6P52701 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
MSH6P52701 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH6P52701 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC20.79■□□□□ 0.92
MSH6P52701 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH6P52701 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH6P52701 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC20.79■□□□□ 0.92
MSH6P52701 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
MSH6P52701 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC20.79■□□□□ 0.92
MSH6P52701 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
MSH6P52701 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH6P52701 AC079328.2-201ENST00000561241 3354 ntBASIC20.79■□□□□ 0.92
MSH6P52701 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
MSH6P52701 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC20.79■□□□□ 0.92
MSH6P52701 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
MSH6P52701 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH6P52701 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
MSH6P52701 AL807761.2-201ENST00000422849 729 ntBASIC20.79■□□□□ 0.92
MSH6P52701 AC006122.1-201ENST00000493323 440 ntBASIC20.79■□□□□ 0.92
MSH6P52701 ORAOV1P1-201ENST00000503108 395 ntBASIC20.79■□□□□ 0.92
MSH6P52701 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC20.79■□□□□ 0.92
MSH6P52701 AC073592.2-201ENST00000623062 780 ntBASIC20.79■□□□□ 0.92
MSH6P52701 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
MSH6P52701 WT1-209ENST00000530998 2421 ntTSL 2 BASIC20.79■□□□□ 0.92
MSH6P52701 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH6P52701 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
MSH6P52701 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
MSH6P52701 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH6P52701 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH6P52701 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC20.79■□□□□ 0.92
MSH6P52701 LINC01165-201ENST00000445190 1623 ntBASIC20.79■□□□□ 0.92
MSH6P52701 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC20.79■□□□□ 0.92
MSH6P52701 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MSH6P52701 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC20.78■□□□□ 0.92
MSH6P52701 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSH6P52701 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
MSH6P52701 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC20.78■□□□□ 0.92
MSH6P52701 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
MSH6P52701 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
MSH6P52701 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC20.78■□□□□ 0.92
MSH6P52701 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
MSH6P52701 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSH6P52701 CES3-203ENST00000543856 3178 ntTSL 2 BASIC20.78■□□□□ 0.92
MSH6P52701 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSH6P52701 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MSH6P52701 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
MSH6P52701 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSH6P52701 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC20.78■□□□□ 0.92
MSH6P52701 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSH6P52701 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC20.78■□□□□ 0.92
MSH6P52701 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
MSH6P52701 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC20.78■□□□□ 0.92
MSH6P52701 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC20.78■□□□□ 0.92
MSH6P52701 MRPL22P1-201ENST00000505398 616 ntBASIC20.78■□□□□ 0.92
MSH6P52701 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC20.78■□□□□ 0.92
MSH6P52701 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSH6P52701 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
MSH6P52701 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC20.78■□□□□ 0.92
MSH6P52701 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC20.78■□□□□ 0.92
MSH6P52701 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC20.78■□□□□ 0.92
MSH6P52701 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSH6P52701 AC006158.1-201ENST00000610661 249 ntBASIC20.78■□□□□ 0.92
MSH6P52701 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC20.78■□□□□ 0.92
MSH6P52701 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC20.78■□□□□ 0.92
MSH6P52701 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC20.78■□□□□ 0.92
MSH6P52701 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSH6P52701 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
MSH6P52701 PCDH8P1-201ENST00000428983 2773 ntBASIC20.78■□□□□ 0.92
MSH6P52701 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC20.78■□□□□ 0.92
MSH6P52701 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
MSH6P52701 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MSH6P52701 RAN-210ENST00000541630 1475 ntTSL 2 BASIC20.78■□□□□ 0.92
MSH6P52701 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MSH6P52701 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC20.78■□□□□ 0.92
MSH6P52701 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
MSH6P52701 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC20.77■□□□□ 0.92
MSH6P52701 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSH6P52701 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSH6P52701 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSH6P52701 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSH6P52701 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
MSH6P52701 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSH6P52701 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC20.77■□□□□ 0.92
MSH6P52701 RN7SKP230-201ENST00000365642 335 ntBASIC20.77■□□□□ 0.92
MSH6P52701 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSH6P52701 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC20.77■□□□□ 0.92
MSH6P52701 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
MSH6P52701 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC20.77■□□□□ 0.92
MSH6P52701 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
MSH6P52701 AC027237.1-201ENST00000560942 655 ntBASIC20.77■□□□□ 0.92
MSH6P52701 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC20.77■□□□□ 0.92
MSH6P52701 AC007326.1-201ENST00000604539 458 ntBASIC20.77■□□□□ 0.92
MSH6P52701 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC20.77■□□□□ 0.92
MSH6P52701 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSH6P52701 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSH6P52701 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
MSH6P52701 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSH6P52701 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSH6P52701 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
MSH6P52701 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms