Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
UPF3AQ9H1J1 AP001330.3-201ENST00000520123 633 ntBASIC25.96■■□□□ 1.75
UPF3AQ9H1J1 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC25.96■■□□□ 1.75
UPF3AQ9H1J1 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
UPF3AQ9H1J1 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC25.95■■□□□ 1.74
UPF3AQ9H1J1 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
UPF3AQ9H1J1 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC25.95■■□□□ 1.74
UPF3AQ9H1J1 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
UPF3AQ9H1J1 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC25.95■■□□□ 1.74
UPF3AQ9H1J1 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC25.95■■□□□ 1.74
UPF3AQ9H1J1 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC25.95■■□□□ 1.74
UPF3AQ9H1J1 MIR5787-201ENST00000611784 55 ntBASIC25.94■■□□□ 1.74
UPF3AQ9H1J1 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC25.93■■□□□ 1.74
UPF3AQ9H1J1 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
UPF3AQ9H1J1 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC25.93■■□□□ 1.74
UPF3AQ9H1J1 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
UPF3AQ9H1J1 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
UPF3AQ9H1J1 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC25.92■■□□□ 1.74
UPF3AQ9H1J1 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC25.92■■□□□ 1.74
UPF3AQ9H1J1 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC25.92■■□□□ 1.74
UPF3AQ9H1J1 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC25.92■■□□□ 1.74
UPF3AQ9H1J1 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC25.92■■□□□ 1.74
UPF3AQ9H1J1 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
UPF3AQ9H1J1 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
UPF3AQ9H1J1 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC25.91■■□□□ 1.74
UPF3AQ9H1J1 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC25.91■■□□□ 1.74
UPF3AQ9H1J1 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC25.91■■□□□ 1.74
UPF3AQ9H1J1 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
UPF3AQ9H1J1 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
UPF3AQ9H1J1 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
UPF3AQ9H1J1 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
UPF3AQ9H1J1 REST-206ENST00000612429 1376 ntTSL 5 BASIC25.91■■□□□ 1.74
UPF3AQ9H1J1 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC25.91■■□□□ 1.74
UPF3AQ9H1J1 REST-207ENST00000616975 1370 ntTSL 5 BASIC25.91■■□□□ 1.74
UPF3AQ9H1J1 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
UPF3AQ9H1J1 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC25.9■■□□□ 1.74
UPF3AQ9H1J1 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC25.9■■□□□ 1.74
UPF3AQ9H1J1 AC091305.1-201ENST00000479476 895 ntBASIC25.9■■□□□ 1.74
UPF3AQ9H1J1 AC092171.4-201ENST00000609130 632 ntBASIC25.9■■□□□ 1.74
UPF3AQ9H1J1 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC25.9■■□□□ 1.74
UPF3AQ9H1J1 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
UPF3AQ9H1J1 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
UPF3AQ9H1J1 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
UPF3AQ9H1J1 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC25.89■■□□□ 1.74
UPF3AQ9H1J1 AC131274.2-201ENST00000580697 1507 ntBASIC25.89■■□□□ 1.74
UPF3AQ9H1J1 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
UPF3AQ9H1J1 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
UPF3AQ9H1J1 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
UPF3AQ9H1J1 AC104564.3-201ENST00000582367 638 ntBASIC25.89■■□□□ 1.74
UPF3AQ9H1J1 MIR4767-201ENST00000582827 78 ntBASIC25.89■■□□□ 1.74
UPF3AQ9H1J1 SYT6-210ENST00000641643 1587 ntBASIC25.89■■□□□ 1.73
UPF3AQ9H1J1 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC25.88■■□□□ 1.73
UPF3AQ9H1J1 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC25.88■■□□□ 1.73
UPF3AQ9H1J1 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
UPF3AQ9H1J1 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
UPF3AQ9H1J1 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC25.88■■□□□ 1.73
UPF3AQ9H1J1 RBM38-205ENST00000440234 686 ntTSL 2 BASIC25.87■■□□□ 1.73
UPF3AQ9H1J1 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC25.87■■□□□ 1.73
UPF3AQ9H1J1 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC25.87■■□□□ 1.73
UPF3AQ9H1J1 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
UPF3AQ9H1J1 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
UPF3AQ9H1J1 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
UPF3AQ9H1J1 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
UPF3AQ9H1J1 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC25.86■■□□□ 1.73
UPF3AQ9H1J1 SERBP1P1-201ENST00000396021 1160 ntBASIC25.86■■□□□ 1.73
UPF3AQ9H1J1 PTMA-205ENST00000410064 814 ntTSL 2 BASIC25.86■■□□□ 1.73
UPF3AQ9H1J1 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
UPF3AQ9H1J1 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
UPF3AQ9H1J1 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC25.86■■□□□ 1.73
UPF3AQ9H1J1 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
UPF3AQ9H1J1 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
UPF3AQ9H1J1 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
UPF3AQ9H1J1 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC25.85■■□□□ 1.73
UPF3AQ9H1J1 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC25.85■■□□□ 1.73
UPF3AQ9H1J1 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC25.85■■□□□ 1.73
UPF3AQ9H1J1 MIR6821-201ENST00000617625 74 ntBASIC25.85■■□□□ 1.73
UPF3AQ9H1J1 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC25.84■■□□□ 1.73
UPF3AQ9H1J1 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
UPF3AQ9H1J1 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC25.84■■□□□ 1.73
UPF3AQ9H1J1 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC25.84■■□□□ 1.73
UPF3AQ9H1J1 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
UPF3AQ9H1J1 STOX2-205ENST00000513034 807 ntTSL 3 BASIC25.84■■□□□ 1.73
UPF3AQ9H1J1 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC25.84■■□□□ 1.73
UPF3AQ9H1J1 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
UPF3AQ9H1J1 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC25.84■■□□□ 1.73
UPF3AQ9H1J1 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC25.84■■□□□ 1.73
UPF3AQ9H1J1 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
UPF3AQ9H1J1 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
UPF3AQ9H1J1 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC25.83■■□□□ 1.73
UPF3AQ9H1J1 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
UPF3AQ9H1J1 PKM-203ENST00000389093 2279 ntTSL 5 BASIC25.83■■□□□ 1.73
UPF3AQ9H1J1 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC25.83■■□□□ 1.73
UPF3AQ9H1J1 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC25.83■■□□□ 1.73
UPF3AQ9H1J1 CA15P2-201ENST00000611168 834 ntBASIC25.83■■□□□ 1.73
UPF3AQ9H1J1 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC25.83■■□□□ 1.73
UPF3AQ9H1J1 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
UPF3AQ9H1J1 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
UPF3AQ9H1J1 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC25.82■■□□□ 1.72
UPF3AQ9H1J1 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
UPF3AQ9H1J1 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC25.82■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms