Protein–RNA interactions for Protein: Q5R1I8

Trav3-1, T cell receptor alpha variable 3-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-1Q5R1I8 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Trav3-1Q5R1I8 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav3-1Q5R1I8 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav3-1Q5R1I8 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
Trav3-1Q5R1I8 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav3-1Q5R1I8 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav3-1Q5R1I8 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC14.15□□□□□ -0.14
Trav3-1Q5R1I8 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav3-1Q5R1I8 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav3-1Q5R1I8 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav3-1Q5R1I8 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
Trav3-1Q5R1I8 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Trav3-1Q5R1I8 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav3-1Q5R1I8 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav3-1Q5R1I8 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Trav3-1Q5R1I8 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trav3-1Q5R1I8 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Trav3-1Q5R1I8 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Trav3-1Q5R1I8 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Trav3-1Q5R1I8 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trav3-1Q5R1I8 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Trav3-1Q5R1I8 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC14.14□□□□□ -0.15
Trav3-1Q5R1I8 Gm19439-201ENSMUST00000198195 2273 ntBASIC14.14□□□□□ -0.15
Trav3-1Q5R1I8 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trav3-1Q5R1I8 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trav3-1Q5R1I8 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC14.13□□□□□ -0.15
Trav3-1Q5R1I8 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trav3-1Q5R1I8 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trav3-1Q5R1I8 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Trav3-1Q5R1I8 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC14.13□□□□□ -0.15
Trav3-1Q5R1I8 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trav3-1Q5R1I8 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trav3-1Q5R1I8 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trav3-1Q5R1I8 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trav3-1Q5R1I8 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trav3-1Q5R1I8 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Trav3-1Q5R1I8 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trav3-1Q5R1I8 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Trav3-1Q5R1I8 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trav3-1Q5R1I8 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC14.12□□□□□ -0.15
Trav3-1Q5R1I8 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC14.12□□□□□ -0.15
Trav3-1Q5R1I8 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trav3-1Q5R1I8 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trav3-1Q5R1I8 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trav3-1Q5R1I8 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trav3-1Q5R1I8 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Trav3-1Q5R1I8 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trav3-1Q5R1I8 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trav3-1Q5R1I8 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trav3-1Q5R1I8 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
Trav3-1Q5R1I8 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Trav3-1Q5R1I8 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trav3-1Q5R1I8 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Trav3-1Q5R1I8 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trav3-1Q5R1I8 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trav3-1Q5R1I8 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trav3-1Q5R1I8 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Trav3-1Q5R1I8 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trav3-1Q5R1I8 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trav3-1Q5R1I8 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC14.11□□□□□ -0.15
Trav3-1Q5R1I8 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
Trav3-1Q5R1I8 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trav3-1Q5R1I8 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC14.1□□□□□ -0.15
Trav3-1Q5R1I8 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trav3-1Q5R1I8 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Trav3-1Q5R1I8 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Trav3-1Q5R1I8 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Trav3-1Q5R1I8 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trav3-1Q5R1I8 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Trav3-1Q5R1I8 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trav3-1Q5R1I8 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trav3-1Q5R1I8 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trav3-1Q5R1I8 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trav3-1Q5R1I8 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trav3-1Q5R1I8 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Trav3-1Q5R1I8 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Trav3-1Q5R1I8 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Trav3-1Q5R1I8 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Trav3-1Q5R1I8 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Trav3-1Q5R1I8 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Trav3-1Q5R1I8 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Trav3-1Q5R1I8 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trav3-1Q5R1I8 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trav3-1Q5R1I8 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC14.09□□□□□ -0.15
Trav3-1Q5R1I8 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trav3-1Q5R1I8 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trav3-1Q5R1I8 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trav3-1Q5R1I8 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trav3-1Q5R1I8 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trav3-1Q5R1I8 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Trav3-1Q5R1I8 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trav3-1Q5R1I8 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trav3-1Q5R1I8 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Trav3-1Q5R1I8 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Trav3-1Q5R1I8 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Trav3-1Q5R1I8 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC14.07□□□□□ -0.16
Trav3-1Q5R1I8 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Trav3-1Q5R1I8 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trav3-1Q5R1I8 Grk6-206ENSMUST00000224995 2971 ntBASIC14.07□□□□□ -0.16
Trav3-1Q5R1I8 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms