Protein–RNA interactions for Protein: P03956

MMP1, Interstitial collagenase, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP1P03956 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
MMP1P03956 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
MMP1P03956 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC26.64■■□□□ 1.86
MMP1P03956 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
MMP1P03956 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
MMP1P03956 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
MMP1P03956 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.86
MMP1P03956 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC26.64■■□□□ 1.86
MMP1P03956 AC009299.2-201ENST00000482477 511 ntBASIC26.64■■□□□ 1.86
MMP1P03956 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC26.64■■□□□ 1.86
MMP1P03956 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.86
MMP1P03956 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC26.64■■□□□ 1.85
MMP1P03956 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.85
MMP1P03956 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC26.63■■□□□ 1.85
MMP1P03956 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
MMP1P03956 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
MMP1P03956 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
MMP1P03956 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC26.63■■□□□ 1.85
MMP1P03956 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
MMP1P03956 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
MMP1P03956 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
MMP1P03956 SHD-204ENST00000599689 1729 ntTSL 5 BASIC26.62■■□□□ 1.85
MMP1P03956 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
MMP1P03956 THA1P-201ENST00000590384 1145 ntBASIC26.62■■□□□ 1.85
MMP1P03956 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC26.61■■□□□ 1.85
MMP1P03956 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC26.61■■□□□ 1.85
MMP1P03956 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
MMP1P03956 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
MMP1P03956 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC26.61■■□□□ 1.85
MMP1P03956 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
MMP1P03956 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC26.6■■□□□ 1.85
MMP1P03956 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC26.6■■□□□ 1.85
MMP1P03956 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
MMP1P03956 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
MMP1P03956 MIR4281-201ENST00000580852 62 ntBASIC26.6■■□□□ 1.85
MMP1P03956 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
MMP1P03956 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
MMP1P03956 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
MMP1P03956 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
MMP1P03956 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
MMP1P03956 YBX1P4-201ENST00000392794 808 ntBASIC26.59■■□□□ 1.85
MMP1P03956 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
MMP1P03956 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC26.59■■□□□ 1.85
MMP1P03956 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC26.59■■□□□ 1.85
MMP1P03956 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC26.59■■□□□ 1.85
MMP1P03956 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC26.59■■□□□ 1.85
MMP1P03956 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
MMP1P03956 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC26.58■■□□□ 1.85
MMP1P03956 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
MMP1P03956 AC103724.3-201ENST00000564481 992 ntBASIC26.58■■□□□ 1.85
MMP1P03956 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC26.58■■□□□ 1.85
MMP1P03956 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
MMP1P03956 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
MMP1P03956 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
MMP1P03956 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
MMP1P03956 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
MMP1P03956 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
MMP1P03956 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
MMP1P03956 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC26.57■■□□□ 1.84
MMP1P03956 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
MMP1P03956 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
MMP1P03956 CD37-213ENST00000598095 1598 ntTSL 2 BASIC26.57■■□□□ 1.84
MMP1P03956 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
MMP1P03956 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC26.56■■□□□ 1.84
MMP1P03956 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC26.56■■□□□ 1.84
MMP1P03956 ABCB10P4-201ENST00000566803 2184 ntBASIC26.56■■□□□ 1.84
MMP1P03956 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC26.56■■□□□ 1.84
MMP1P03956 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
MMP1P03956 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
MMP1P03956 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC26.56■■□□□ 1.84
MMP1P03956 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
MMP1P03956 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC26.55■■□□□ 1.84
MMP1P03956 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC26.55■■□□□ 1.84
MMP1P03956 AF131216.4-201ENST00000638924 1588 ntBASIC26.55■■□□□ 1.84
MMP1P03956 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC26.55■■□□□ 1.84
MMP1P03956 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
MMP1P03956 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC26.55■■□□□ 1.84
MMP1P03956 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC26.54■■□□□ 1.84
MMP1P03956 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
MMP1P03956 HES6-204ENST00000409182 863 ntTSL 2 BASIC26.54■■□□□ 1.84
MMP1P03956 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC26.54■■□□□ 1.84
MMP1P03956 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
MMP1P03956 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
MMP1P03956 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
MMP1P03956 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC26.53■■□□□ 1.84
MMP1P03956 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC26.53■■□□□ 1.84
MMP1P03956 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
MMP1P03956 AC131274.2-201ENST00000580697 1507 ntBASIC26.53■■□□□ 1.84
MMP1P03956 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC26.53■■□□□ 1.84
MMP1P03956 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
MMP1P03956 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
MMP1P03956 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
MMP1P03956 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
MMP1P03956 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC26.52■■□□□ 1.84
MMP1P03956 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC26.52■■□□□ 1.84
MMP1P03956 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC26.52■■□□□ 1.84
MMP1P03956 AL161729.1-201ENST00000604104 1402 ntBASIC26.52■■□□□ 1.84
MMP1P03956 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
MMP1P03956 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC26.51■■□□□ 1.83
MMP1P03956 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC26.51■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms