Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A3BPQ9Y5P4 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC17.14■□□□□ 0.33
COL4A3BPQ9Y5P4 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
COL4A3BPQ9Y5P4 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC17.14■□□□□ 0.33
COL4A3BPQ9Y5P4 BTNL10-201ENST00000595971 695 ntBASIC17.14■□□□□ 0.33
COL4A3BPQ9Y5P4 AC233724.13-201ENST00000598383 410 ntBASIC17.14■□□□□ 0.33
COL4A3BPQ9Y5P4 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC17.14■□□□□ 0.33
COL4A3BPQ9Y5P4 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
COL4A3BPQ9Y5P4 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
COL4A3BPQ9Y5P4 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A3BPQ9Y5P4 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A3BPQ9Y5P4 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
COL4A3BPQ9Y5P4 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A3BPQ9Y5P4 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.14■□□□□ 0.33
COL4A3BPQ9Y5P4 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
COL4A3BPQ9Y5P4 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
COL4A3BPQ9Y5P4 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A3BPQ9Y5P4 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A3BPQ9Y5P4 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A3BPQ9Y5P4 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 FLJ16779-201ENST00000612722 7638 ntBASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 AGAP7P-201ENST00000582299 2062 ntBASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 AGAP14-201ENST00000624701 2060 ntBASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 AC063926.3-201ENST00000624734 5658 ntBASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 MGST3-203ENST00000367885 680 ntTSL 2 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 TEX30-203ENST00000376022 828 ntTSL 2 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 SLC25A47P1-201ENST00000531577 414 ntBASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 PTP4A1P2-201ENST00000546033 454 ntBASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 ORC6-206ENST00000568364 888 ntTSL 5 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 METTL26-214ENST00000614890 801 ntTSL 3 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 POR-201ENST00000394893 2532 ntTSL 5 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 ZEB1-AS1-208ENST00000607166 2503 ntBASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 AC018665.1-201ENST00000622927 1362 ntBASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A3BPQ9Y5P4 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 USE1-206ENST00000595101 1776 ntTSL 2 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 HIST1H2BPS3-201ENST00000419683 341 ntBASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC17.12■□□□□ 0.33
COL4A3BPQ9Y5P4 AC068587.3-201ENST00000526613 355 ntBASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms