Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC16.32■□□□□ 0.2
CISHQ9NSE2 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CISHQ9NSE2 AC011495.1-201ENST00000498085 584 ntBASIC16.32■□□□□ 0.2
CISHQ9NSE2 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CISHQ9NSE2 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CISHQ9NSE2 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CISHQ9NSE2 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
CISHQ9NSE2 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.32■□□□□ 0.2
CISHQ9NSE2 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC16.32■□□□□ 0.2
CISHQ9NSE2 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
CISHQ9NSE2 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CISHQ9NSE2 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
CISHQ9NSE2 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
CISHQ9NSE2 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC16.32■□□□□ 0.2
CISHQ9NSE2 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CISHQ9NSE2 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CISHQ9NSE2 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CISHQ9NSE2 AP005019.2-201ENST00000615104 511 ntBASIC16.32■□□□□ 0.2
CISHQ9NSE2 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CISHQ9NSE2 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CISHQ9NSE2 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CISHQ9NSE2 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.32■□□□□ 0.2
CISHQ9NSE2 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CISHQ9NSE2 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CISHQ9NSE2 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CISHQ9NSE2 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CISHQ9NSE2 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CISHQ9NSE2 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
CISHQ9NSE2 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CISHQ9NSE2 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CISHQ9NSE2 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CISHQ9NSE2 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CISHQ9NSE2 LILRP1-201ENST00000444199 1370 ntBASIC16.31■□□□□ 0.2
CISHQ9NSE2 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC16.31■□□□□ 0.2
CISHQ9NSE2 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CISHQ9NSE2 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 KLF2P2-201ENST00000416807 1039 ntBASIC16.31■□□□□ 0.2
CISHQ9NSE2 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 AC114812.1-204ENST00000449669 728 ntBASIC16.31■□□□□ 0.2
CISHQ9NSE2 INE1-201ENST00000456273 945 ntBASIC16.31■□□□□ 0.2
CISHQ9NSE2 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 CECR7-204ENST00000609932 568 ntTSL 2 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CISHQ9NSE2 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CISHQ9NSE2 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CISHQ9NSE2 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CISHQ9NSE2 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CISHQ9NSE2 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CISHQ9NSE2 MSTO2P-201ENST00000314835 1709 ntBASIC16.31■□□□□ 0.2
CISHQ9NSE2 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CISHQ9NSE2 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC16.3■□□□□ 0.2
CISHQ9NSE2 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.3■□□□□ 0.2
CISHQ9NSE2 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CISHQ9NSE2 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC16.3■□□□□ 0.2
CISHQ9NSE2 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CISHQ9NSE2 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CISHQ9NSE2 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.3■□□□□ 0.2
CISHQ9NSE2 KRT8P14-201ENST00000414254 1442 ntBASIC16.3■□□□□ 0.2
CISHQ9NSE2 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CISHQ9NSE2 CU639417.3-201ENST00000624240 1404 ntBASIC16.3■□□□□ 0.2
CISHQ9NSE2 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CISHQ9NSE2 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CISHQ9NSE2 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CISHQ9NSE2 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CISHQ9NSE2 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CISHQ9NSE2 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CISHQ9NSE2 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC16.3■□□□□ 0.2
CISHQ9NSE2 MARS-233ENST00000628866 2583 ntTSL 5 BASIC16.3■□□□□ 0.2
CISHQ9NSE2 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CISHQ9NSE2 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CISHQ9NSE2 COX5BP8-201ENST00000416911 349 ntBASIC16.3■□□□□ 0.2
CISHQ9NSE2 ACTG1P3-201ENST00000431775 1114 ntBASIC16.3■□□□□ 0.2
CISHQ9NSE2 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CISHQ9NSE2 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CISHQ9NSE2 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CISHQ9NSE2 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.3■□□□□ 0.2
CISHQ9NSE2 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CISHQ9NSE2 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.3■□□□□ 0.2
CISHQ9NSE2 AC009486.1-201ENST00000569860 813 ntBASIC16.3■□□□□ 0.2
CISHQ9NSE2 MIR5189-201ENST00000577370 114 ntBASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms