Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 MIR4313-201ENST00000580760 101 ntBASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 BX539320.1-201ENST00000623759 877 ntBASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 KRT8P35-201ENST00000483942 1338 ntBASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 ZNF767P-206ENST00000513792 565 ntBASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 C2orf69P2-201ENST00000562032 1123 ntBASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 AL118558.3-201ENST00000607414 1079 ntBASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 AL138709.1-201ENST00000614840 1693 ntBASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 PRAL-201ENST00000624952 3286 ntBASIC15.34■□□□□ 0.05
TM9SF3Q9HD45 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
TM9SF3Q9HD45 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
TM9SF3Q9HD45 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
TM9SF3Q9HD45 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
TM9SF3Q9HD45 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.05
TM9SF3Q9HD45 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 AC006033.1-201ENST00000440505 426 ntBASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 GOLGA2P4-201ENST00000441462 777 ntBASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 PFN2-215ENST00000497148 743 ntTSL 4 BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 IGHV3OR16-16-201ENST00000563644 343 ntBASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 AC132938.4-201ENST00000623835 848 ntBASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 AL139099.5-201ENST00000635274 300 ntBASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 ABBA01031663.1-201ENST00000635630 790 ntBASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 AC068587.10-201ENST00000641210 219 ntBASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF3Q9HD45 AHCYP2-201ENST00000430630 1300 ntBASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms