Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH6P52701 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
MSH6P52701 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH6P52701 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC20.85■□□□□ 0.93
MSH6P52701 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MSH6P52701 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC20.85■□□□□ 0.93
MSH6P52701 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
MSH6P52701 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC20.85■□□□□ 0.93
MSH6P52701 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC20.85■□□□□ 0.93
MSH6P52701 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC20.85■□□□□ 0.93
MSH6P52701 POLD4-208ENST00000532830 904 ntTSL 3 BASIC20.85■□□□□ 0.93
MSH6P52701 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC20.85■□□□□ 0.93
MSH6P52701 AL118516.1-201ENST00000564152 670 ntBASIC20.85■□□□□ 0.93
MSH6P52701 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH6P52701 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC20.85■□□□□ 0.93
MSH6P52701 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC20.85■□□□□ 0.93
MSH6P52701 AC008825.2-201ENST00000603374 718 ntBASIC20.85■□□□□ 0.93
MSH6P52701 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
MSH6P52701 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH6P52701 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH6P52701 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH6P52701 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH6P52701 ABR-203ENST00000536794 2213 ntTSL 2 BASIC20.85■□□□□ 0.93
MSH6P52701 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH6P52701 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MSH6P52701 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC20.85■□□□□ 0.93
MSH6P52701 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH6P52701 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MSH6P52701 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MSH6P52701 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC20.85■□□□□ 0.93
MSH6P52701 AGPAT5P1-201ENST00000455855 1019 ntBASIC20.85■□□□□ 0.93
MSH6P52701 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC20.85■□□□□ 0.93
MSH6P52701 RN7SL81P-201ENST00000493781 261 ntBASIC20.85■□□□□ 0.93
MSH6P52701 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
MSH6P52701 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC20.85■□□□□ 0.93
MSH6P52701 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC20.85■□□□□ 0.93
MSH6P52701 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC20.85■□□□□ 0.93
MSH6P52701 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC20.85■□□□□ 0.93
MSH6P52701 AC244250.3-201ENST00000620749 366 ntBASIC20.85■□□□□ 0.93
MSH6P52701 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
MSH6P52701 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
MSH6P52701 LINC00431-202ENST00000636375 159 ntBASIC20.85■□□□□ 0.93
MSH6P52701 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSH6P52701 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC20.84■□□□□ 0.93
MSH6P52701 AC006058.4-201ENST00000624016 1670 ntBASIC20.84■□□□□ 0.93
MSH6P52701 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSH6P52701 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MSH6P52701 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC20.84■□□□□ 0.93
MSH6P52701 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC20.84■□□□□ 0.93
MSH6P52701 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
MSH6P52701 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
MSH6P52701 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC20.84■□□□□ 0.93
MSH6P52701 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
MSH6P52701 AL662844.4-201ENST00000606367 2838 ntBASIC20.84■□□□□ 0.93
MSH6P52701 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MSH6P52701 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSH6P52701 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20.84■□□□□ 0.93
MSH6P52701 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MSH6P52701 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC20.84■□□□□ 0.93
MSH6P52701 HIST2H2BA-201ENST00000412169 381 ntBASIC20.84■□□□□ 0.93
MSH6P52701 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC20.84■□□□□ 0.93
MSH6P52701 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC20.84■□□□□ 0.93
MSH6P52701 AC024293.1-201ENST00000467930 498 ntBASIC20.84■□□□□ 0.93
MSH6P52701 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MSH6P52701 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC20.84■□□□□ 0.93
MSH6P52701 MIR6720-201ENST00000611664 98 ntBASIC20.84■□□□□ 0.93
MSH6P52701 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC20.84■□□□□ 0.93
MSH6P52701 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC20.84■□□□□ 0.93
MSH6P52701 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MSH6P52701 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
MSH6P52701 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC20.83■□□□□ 0.93
MSH6P52701 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
MSH6P52701 AL118508.1-201ENST00000613502 2345 ntBASIC20.83■□□□□ 0.93
MSH6P52701 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
MSH6P52701 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
MSH6P52701 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC20.83■□□□□ 0.93
MSH6P52701 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC20.83■□□□□ 0.93
MSH6P52701 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC20.83■□□□□ 0.93
MSH6P52701 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
MSH6P52701 REXO1L5P-201ENST00000622260 2098 ntBASIC20.83■□□□□ 0.93
MSH6P52701 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
MSH6P52701 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
MSH6P52701 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC20.83■□□□□ 0.92
MSH6P52701 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
MSH6P52701 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
MSH6P52701 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
MSH6P52701 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
MSH6P52701 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC20.83■□□□□ 0.92
MSH6P52701 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
MSH6P52701 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.92
MSH6P52701 BAK1P1-201ENST00000317045 636 ntBASIC20.83■□□□□ 0.92
MSH6P52701 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
MSH6P52701 AL357563.1-201ENST00000404728 395 ntBASIC20.83■□□□□ 0.92
MSH6P52701 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC20.83■□□□□ 0.92
MSH6P52701 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
MSH6P52701 DGAT2L7P-201ENST00000602462 744 ntBASIC20.83■□□□□ 0.92
MSH6P52701 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
MSH6P52701 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
MSH6P52701 AC092364.2-201ENST00000596710 2692 ntBASIC20.83■□□□□ 0.92
MSH6P52701 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms