Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 SOCS2P1-201ENST00000417727 557 ntBASIC14.07□□□□□ -0.16
HOXD4P09016 TMEM14DP-201ENST00000422205 345 ntBASIC14.07□□□□□ -0.16
HOXD4P09016 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC14.07□□□□□ -0.16
HOXD4P09016 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.07□□□□□ -0.16
HOXD4P09016 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC14.07□□□□□ -0.16
HOXD4P09016 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
HOXD4P09016 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
HOXD4P09016 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC14.07□□□□□ -0.16
HOXD4P09016 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.07□□□□□ -0.16
HOXD4P09016 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
HOXD4P09016 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.07□□□□□ -0.16
HOXD4P09016 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.07□□□□□ -0.16
HOXD4P09016 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXD4P09016 AC009486.1-201ENST00000569860 813 ntBASIC14.07□□□□□ -0.16
HOXD4P09016 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
HOXD4P09016 MIR4259-201ENST00000584466 101 ntBASIC14.07□□□□□ -0.16
HOXD4P09016 AC010319.3-201ENST00000597028 470 ntBASIC14.07□□□□□ -0.16
HOXD4P09016 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.07□□□□□ -0.16
HOXD4P09016 CU634019.7-201ENST00000624153 1185 ntBASIC14.07□□□□□ -0.16
HOXD4P09016 FP236241.2-201ENST00000624906 1185 ntBASIC14.07□□□□□ -0.16
HOXD4P09016 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXD4P09016 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXD4P09016 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXD4P09016 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXD4P09016 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
HOXD4P09016 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXD4P09016 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC14.07□□□□□ -0.16
HOXD4P09016 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.07□□□□□ -0.16
HOXD4P09016 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXD4P09016 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
HOXD4P09016 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
HOXD4P09016 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXD4P09016 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXD4P09016 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXD4P09016 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
HOXD4P09016 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
HOXD4P09016 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXD4P09016 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXD4P09016 NFIC-211ENST00000641145 8399 ntBASIC14.06□□□□□ -0.16
HOXD4P09016 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXD4P09016 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXD4P09016 AC011477.6-201ENST00000604980 1927 ntBASIC14.06□□□□□ -0.16
HOXD4P09016 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXD4P09016 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
HOXD4P09016 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXD4P09016 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
HOXD4P09016 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC14.06□□□□□ -0.16
HOXD4P09016 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.06□□□□□ -0.16
HOXD4P09016 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXD4P09016 KRT18P43-201ENST00000469825 1281 ntBASIC14.06□□□□□ -0.16
HOXD4P09016 AC119751.2-201ENST00000504529 210 ntBASIC14.06□□□□□ -0.16
HOXD4P09016 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXD4P09016 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXD4P09016 NOP2-211ENST00000540228 668 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXD4P09016 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXD4P09016 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC14.06□□□□□ -0.16
HOXD4P09016 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC14.06□□□□□ -0.16
HOXD4P09016 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXD4P09016 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.06□□□□□ -0.16
HOXD4P09016 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC14.06□□□□□ -0.16
HOXD4P09016 AC008735.3-201ENST00000596646 500 ntBASIC14.06□□□□□ -0.16
HOXD4P09016 AC233724.13-201ENST00000598383 410 ntBASIC14.06□□□□□ -0.16
HOXD4P09016 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXD4P09016 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
HOXD4P09016 MIR6775-201ENST00000617557 69 ntBASIC14.06□□□□□ -0.16
HOXD4P09016 AL033527.4-201ENST00000641026 673 ntBASIC14.06□□□□□ -0.16
HOXD4P09016 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
HOXD4P09016 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC14.06□□□□□ -0.16
HOXD4P09016 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 AC005840.4-201ENST00000541242 2494 ntBASIC14.06□□□□□ -0.16
HOXD4P09016 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HOXD4P09016 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms