Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 ELP6-209ENST00000446787 894 ntTSL 3 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 AC009477.1-201ENST00000452936 217 ntBASIC14.9□□□□□ -0.02
VMP1Q96GC9 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 ZNF890P-202ENST00000530367 1156 ntBASIC14.9□□□□□ -0.02
VMP1Q96GC9 MIR4745-201ENST00000577608 62 ntBASIC14.9□□□□□ -0.02
VMP1Q96GC9 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 AC136621.1-201ENST00000624017 2304 ntBASIC14.9□□□□□ -0.02
VMP1Q96GC9 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 AC020658.6-201ENST00000623564 1870 ntBASIC14.9□□□□□ -0.02
VMP1Q96GC9 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 KRT8P37-201ENST00000451609 1420 ntBASIC14.9□□□□□ -0.02
VMP1Q96GC9 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 PCDHA3-202ENST00000532566 4594 ntBASIC14.9□□□□□ -0.02
VMP1Q96GC9 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VMP1Q96GC9 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
VMP1Q96GC9 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 ZBTB45P2-201ENST00000452245 1531 ntBASIC14.89□□□□□ -0.03
VMP1Q96GC9 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 EEF1DP4-201ENST00000446006 880 ntBASIC14.89□□□□□ -0.03
VMP1Q96GC9 TSPY16P-201ENST00000449843 468 ntBASIC14.89□□□□□ -0.03
VMP1Q96GC9 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 SUOX-214ENST00000551841 906 ntTSL 3 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 AL512361.1-201ENST00000554200 418 ntBASIC14.89□□□□□ -0.03
VMP1Q96GC9 AC010336.2-201ENST00000564226 506 ntBASIC14.89□□□□□ -0.03
VMP1Q96GC9 MIR3197-201ENST00000582241 73 ntBASIC14.89□□□□□ -0.03
VMP1Q96GC9 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 SPIB-207ENST00000597855 564 ntTSL 4 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.89□□□□□ -0.03
VMP1Q96GC9 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms