Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 GPAA1P2-202ENST00000606848 1787 ntBASIC16.81■□□□□ 0.28
RNF40O75150 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF40O75150 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF40O75150 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
RNF40O75150 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC16.81■□□□□ 0.28
RNF40O75150 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF40O75150 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF40O75150 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.81■□□□□ 0.28
RNF40O75150 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF40O75150 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF40O75150 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RNF40O75150 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
RNF40O75150 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF40O75150 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF40O75150 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.8■□□□□ 0.28
RNF40O75150 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.8■□□□□ 0.28
RNF40O75150 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
RNF40O75150 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.8■□□□□ 0.28
RNF40O75150 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
RNF40O75150 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC16.8■□□□□ 0.28
RNF40O75150 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF40O75150 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
RNF40O75150 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.8■□□□□ 0.28
RNF40O75150 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.8■□□□□ 0.28
RNF40O75150 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RNF40O75150 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC16.8■□□□□ 0.28
RNF40O75150 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF40O75150 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF40O75150 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
RNF40O75150 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF40O75150 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF40O75150 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
RNF40O75150 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF40O75150 OR8S1-201ENST00000310194 1080 ntBASIC16.8■□□□□ 0.28
RNF40O75150 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
RNF40O75150 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC16.8■□□□□ 0.28
RNF40O75150 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF40O75150 ATP6V1G1-201ENST00000374050 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF40O75150 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF40O75150 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.8■□□□□ 0.28
RNF40O75150 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC16.8■□□□□ 0.28
RNF40O75150 AC009477.1-201ENST00000452936 217 ntBASIC16.8■□□□□ 0.28
RNF40O75150 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC16.8■□□□□ 0.28
RNF40O75150 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.8■□□□□ 0.28
RNF40O75150 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.8■□□□□ 0.28
RNF40O75150 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.8■□□□□ 0.28
RNF40O75150 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC16.8■□□□□ 0.28
RNF40O75150 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.8■□□□□ 0.28
RNF40O75150 AL008721.1-201ENST00000609964 604 ntBASIC16.8■□□□□ 0.28
RNF40O75150 TEX28P1-201ENST00000613479 1221 ntBASIC16.8■□□□□ 0.28
RNF40O75150 TEX28P2-201ENST00000617764 1221 ntBASIC16.8■□□□□ 0.28
RNF40O75150 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF40O75150 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF40O75150 AC041040.2-201ENST00000622926 2899 ntBASIC16.8■□□□□ 0.28
RNF40O75150 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.8■□□□□ 0.28
RNF40O75150 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RNF40O75150 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
RNF40O75150 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF40O75150 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF40O75150 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RNF40O75150 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC16.8■□□□□ 0.28
RNF40O75150 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
RNF40O75150 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC16.8■□□□□ 0.28
RNF40O75150 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC16.8■□□□□ 0.28
RNF40O75150 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
RNF40O75150 CETN4P-206ENST00000642099 2168 ntBASIC16.79■□□□□ 0.28
RNF40O75150 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC16.79■□□□□ 0.28
RNF40O75150 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 KRT8P39-201ENST00000396270 1433 ntBASIC16.79■□□□□ 0.28
RNF40O75150 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.79■□□□□ 0.28
RNF40O75150 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
RNF40O75150 AC073439.1-201ENST00000624121 1774 ntBASIC16.79■□□□□ 0.28
RNF40O75150 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC16.79■□□□□ 0.28
RNF40O75150 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
RNF40O75150 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 AL161772.1-201ENST00000610494 4412 ntBASIC16.79■□□□□ 0.28
RNF40O75150 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
RNF40O75150 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
RNF40O75150 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC16.79■□□□□ 0.28
RNF40O75150 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.79■□□□□ 0.28
RNF40O75150 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
RNF40O75150 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF40O75150 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.79■□□□□ 0.28
RNF40O75150 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms