Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CTCFP49711 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CTCFP49711 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CTCFP49711 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CTCFP49711 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
CTCFP49711 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CTCFP49711 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CTCFP49711 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CTCFP49711 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CTCFP49711 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
CTCFP49711 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CTCFP49711 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CTCFP49711 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CTCFP49711 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CTCFP49711 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC17.86■□□□□ 0.45
CTCFP49711 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CTCFP49711 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC17.86■□□□□ 0.45
CTCFP49711 AC104073.2-201ENST00000453737 312 ntBASIC17.86■□□□□ 0.45
CTCFP49711 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC17.86■□□□□ 0.45
CTCFP49711 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC17.86■□□□□ 0.45
CTCFP49711 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CTCFP49711 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC17.86■□□□□ 0.45
CTCFP49711 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC17.86■□□□□ 0.45
CTCFP49711 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC17.86■□□□□ 0.45
CTCFP49711 BX539320.1-201ENST00000623759 877 ntBASIC17.86■□□□□ 0.45
CTCFP49711 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CTCFP49711 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC17.86■□□□□ 0.45
CTCFP49711 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
CTCFP49711 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC17.86■□□□□ 0.45
CTCFP49711 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CTCFP49711 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.86■□□□□ 0.45
CTCFP49711 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.86■□□□□ 0.45
CTCFP49711 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.86■□□□□ 0.45
CTCFP49711 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CTCFP49711 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.86■□□□□ 0.45
CTCFP49711 AC105020.1-201ENST00000435356 2205 ntBASIC17.86■□□□□ 0.45
CTCFP49711 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CTCFP49711 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CTCFP49711 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CTCFP49711 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CTCFP49711 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.86■□□□□ 0.45
CTCFP49711 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CTCFP49711 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CTCFP49711 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.85■□□□□ 0.45
CTCFP49711 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CTCFP49711 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CTCFP49711 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
CTCFP49711 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CTCFP49711 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.85■□□□□ 0.45
CTCFP49711 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CTCFP49711 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CTCFP49711 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC17.85■□□□□ 0.45
CTCFP49711 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CTCFP49711 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CTCFP49711 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CTCFP49711 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.85■□□□□ 0.45
CTCFP49711 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CTCFP49711 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.85■□□□□ 0.45
CTCFP49711 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CTCFP49711 AP000356.3-201ENST00000382243 753 ntBASIC17.85■□□□□ 0.45
CTCFP49711 AL357373.1-201ENST00000394974 322 ntBASIC17.85■□□□□ 0.45
CTCFP49711 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CTCFP49711 SERBP1P2-201ENST00000436888 1164 ntBASIC17.85■□□□□ 0.45
CTCFP49711 RNMTL1P1-201ENST00000454103 560 ntBASIC17.85■□□□□ 0.45
CTCFP49711 AC018463.1-201ENST00000456674 917 ntBASIC17.85■□□□□ 0.45
CTCFP49711 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.85■□□□□ 0.45
CTCFP49711 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC17.85■□□□□ 0.45
CTCFP49711 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CTCFP49711 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC17.85■□□□□ 0.45
CTCFP49711 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CTCFP49711 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC17.85■□□□□ 0.45
CTCFP49711 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC17.85■□□□□ 0.45
CTCFP49711 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC17.85■□□□□ 0.45
CTCFP49711 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC17.85■□□□□ 0.45
CTCFP49711 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CTCFP49711 AC092053.1-201ENST00000605787 1936 ntBASIC17.85■□□□□ 0.45
CTCFP49711 ZACNP1-201ENST00000612259 710 ntBASIC17.85■□□□□ 0.45
CTCFP49711 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.85■□□□□ 0.45
CTCFP49711 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CTCFP49711 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CTCFP49711 MME-218ENST00000625667 363 ntTSL 5 BASIC17.85■□□□□ 0.45
CTCFP49711 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.85■□□□□ 0.45
CTCFP49711 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CTCFP49711 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CTCFP49711 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CTCFP49711 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.85■□□□□ 0.45
CTCFP49711 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CTCFP49711 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
CTCFP49711 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CTCFP49711 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CTCFP49711 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CTCFP49711 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.84■□□□□ 0.45
CTCFP49711 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
CTCFP49711 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CTCFP49711 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CTCFP49711 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CTCFP49711 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CTCFP49711 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC17.84■□□□□ 0.45
CTCFP49711 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CTCFP49711 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 94.3 ms