Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC14.89□□□□□ -0.03
PDLIM1O00151 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PDLIM1O00151 AC023024.2-201ENST00000623561 1993 ntBASIC14.89□□□□□ -0.03
PDLIM1O00151 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PDLIM1O00151 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.89□□□□□ -0.03
PDLIM1O00151 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC14.89□□□□□ -0.03
PDLIM1O00151 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PDLIM1O00151 AC012569.1-201ENST00000591191 1524 ntBASIC14.89□□□□□ -0.03
PDLIM1O00151 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
PDLIM1O00151 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
PDLIM1O00151 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
PDLIM1O00151 CD99-202ENST00000381180 530 ntTSL 2 BASIC14.89□□□□□ -0.03
PDLIM1O00151 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC14.89□□□□□ -0.03
PDLIM1O00151 AC004832.2-201ENST00000426397 482 ntBASIC14.89□□□□□ -0.03
PDLIM1O00151 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC14.89□□□□□ -0.03
PDLIM1O00151 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
PDLIM1O00151 MAL2-202ENST00000531508 892 ntTSL 3 BASIC14.89□□□□□ -0.03
PDLIM1O00151 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC14.89□□□□□ -0.03
PDLIM1O00151 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC14.89□□□□□ -0.03
PDLIM1O00151 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC14.89□□□□□ -0.03
PDLIM1O00151 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC14.89□□□□□ -0.03
PDLIM1O00151 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC14.89□□□□□ -0.03
PDLIM1O00151 AC092865.6-201ENST00000642101 219 ntBASIC14.89□□□□□ -0.03
PDLIM1O00151 AC018892.3-201ENST00000623986 2499 ntBASIC14.89□□□□□ -0.03
PDLIM1O00151 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PDLIM1O00151 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PDLIM1O00151 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
PDLIM1O00151 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
PDLIM1O00151 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
PDLIM1O00151 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
PDLIM1O00151 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
PDLIM1O00151 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PDLIM1O00151 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PDLIM1O00151 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
PDLIM1O00151 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PDLIM1O00151 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.89□□□□□ -0.03
PDLIM1O00151 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.88□□□□□ -0.03
PDLIM1O00151 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC14.88□□□□□ -0.03
PDLIM1O00151 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
PDLIM1O00151 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.88□□□□□ -0.03
PDLIM1O00151 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.88□□□□□ -0.03
PDLIM1O00151 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
PDLIM1O00151 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.88□□□□□ -0.03
PDLIM1O00151 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC14.88□□□□□ -0.03
PDLIM1O00151 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC14.88□□□□□ -0.03
PDLIM1O00151 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC14.88□□□□□ -0.03
PDLIM1O00151 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 PMP22-202ENST00000395936 816 ntTSL 3 BASIC14.88□□□□□ -0.03
PDLIM1O00151 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC14.88□□□□□ -0.03
PDLIM1O00151 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
PDLIM1O00151 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC14.88□□□□□ -0.03
PDLIM1O00151 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC14.88□□□□□ -0.03
PDLIM1O00151 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
PDLIM1O00151 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC14.88□□□□□ -0.03
PDLIM1O00151 KRT19P2-202ENST00000557173 1012 ntBASIC14.88□□□□□ -0.03
PDLIM1O00151 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.88□□□□□ -0.03
PDLIM1O00151 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC14.88□□□□□ -0.03
PDLIM1O00151 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
PDLIM1O00151 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 AC023141.13-201ENST00000604991 943 ntBASIC14.88□□□□□ -0.03
PDLIM1O00151 AC004877.2-201ENST00000623941 599 ntBASIC14.88□□□□□ -0.03
PDLIM1O00151 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC14.88□□□□□ -0.03
PDLIM1O00151 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.88□□□□□ -0.03
PDLIM1O00151 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.88□□□□□ -0.03
PDLIM1O00151 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.88□□□□□ -0.03
PDLIM1O00151 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 HSPA7-201ENST00000445535 1927 ntBASIC14.88□□□□□ -0.03
PDLIM1O00151 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.88□□□□□ -0.03
PDLIM1O00151 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.88□□□□□ -0.03
PDLIM1O00151 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
PDLIM1O00151 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PDLIM1O00151 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.87□□□□□ -0.03
PDLIM1O00151 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.87□□□□□ -0.03
PDLIM1O00151 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PDLIM1O00151 AL928921.2-201ENST00000641325 2442 ntBASIC14.87□□□□□ -0.03
PDLIM1O00151 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PDLIM1O00151 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PDLIM1O00151 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC14.87□□□□□ -0.03
PDLIM1O00151 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
PDLIM1O00151 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms