Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC27.98■■■□□ 2.07
SMC1BQ8NDV3 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC27.98■■■□□ 2.07
SMC1BQ8NDV3 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC27.98■■■□□ 2.07
SMC1BQ8NDV3 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
SMC1BQ8NDV3 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
SMC1BQ8NDV3 GXYLT1P2-201ENST00000433312 1230 ntBASIC27.97■■■□□ 2.07
SMC1BQ8NDV3 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC27.97■■■□□ 2.07
SMC1BQ8NDV3 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC27.97■■■□□ 2.07
SMC1BQ8NDV3 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC27.97■■■□□ 2.07
SMC1BQ8NDV3 RAB43-208ENST00000615093 783 ntTSL 5 BASIC27.97■■■□□ 2.07
SMC1BQ8NDV3 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC27.96■■■□□ 2.07
SMC1BQ8NDV3 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC27.96■■■□□ 2.07
SMC1BQ8NDV3 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC27.96■■■□□ 2.07
SMC1BQ8NDV3 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
SMC1BQ8NDV3 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC27.96■■■□□ 2.07
SMC1BQ8NDV3 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
SMC1BQ8NDV3 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC27.96■■■□□ 2.07
SMC1BQ8NDV3 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC27.96■■■□□ 2.07
SMC1BQ8NDV3 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
SMC1BQ8NDV3 AL449106.1-201ENST00000608517 1980 ntBASIC27.95■■■□□ 2.07
SMC1BQ8NDV3 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC27.95■■■□□ 2.07
SMC1BQ8NDV3 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC27.95■■■□□ 2.07
SMC1BQ8NDV3 GRAMD4P2-201ENST00000423297 1097 ntBASIC27.95■■■□□ 2.06
SMC1BQ8NDV3 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC27.95■■■□□ 2.06
SMC1BQ8NDV3 BX255925.1-201ENST00000566954 1854 ntBASIC27.95■■■□□ 2.06
SMC1BQ8NDV3 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC27.94■■■□□ 2.06
SMC1BQ8NDV3 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC27.94■■■□□ 2.06
SMC1BQ8NDV3 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC27.94■■■□□ 2.06
SMC1BQ8NDV3 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
SMC1BQ8NDV3 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC27.94■■■□□ 2.06
SMC1BQ8NDV3 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
SMC1BQ8NDV3 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC27.94■■■□□ 2.06
SMC1BQ8NDV3 AC099791.2-201ENST00000605725 427 ntBASIC27.94■■■□□ 2.06
SMC1BQ8NDV3 AC233992.3-201ENST00000607491 485 ntBASIC27.94■■■□□ 2.06
SMC1BQ8NDV3 TMEM191A-211ENST00000637163 1067 ntBASIC27.94■■■□□ 2.06
SMC1BQ8NDV3 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
SMC1BQ8NDV3 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
SMC1BQ8NDV3 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
SMC1BQ8NDV3 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC27.93■■■□□ 2.06
SMC1BQ8NDV3 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
SMC1BQ8NDV3 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC27.93■■■□□ 2.06
SMC1BQ8NDV3 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC27.93■■■□□ 2.06
SMC1BQ8NDV3 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
SMC1BQ8NDV3 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC27.93■■■□□ 2.06
SMC1BQ8NDV3 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC27.92■■■□□ 2.06
SMC1BQ8NDV3 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC27.92■■■□□ 2.06
SMC1BQ8NDV3 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC27.92■■■□□ 2.06
SMC1BQ8NDV3 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
SMC1BQ8NDV3 TK2-208ENST00000545043 1120 ntTSL 2 BASIC27.92■■■□□ 2.06
SMC1BQ8NDV3 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC27.92■■■□□ 2.06
SMC1BQ8NDV3 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
SMC1BQ8NDV3 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC27.91■■■□□ 2.06
SMC1BQ8NDV3 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
SMC1BQ8NDV3 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC27.91■■■□□ 2.06
SMC1BQ8NDV3 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC27.91■■■□□ 2.06
SMC1BQ8NDV3 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC27.91■■■□□ 2.06
SMC1BQ8NDV3 AC005703.6-201ENST00000623265 1329 ntBASIC27.91■■■□□ 2.06
SMC1BQ8NDV3 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
SMC1BQ8NDV3 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC27.9■■■□□ 2.06
SMC1BQ8NDV3 LBH-205ENST00000407930 756 ntTSL 2 BASIC27.9■■■□□ 2.06
SMC1BQ8NDV3 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC27.9■■■□□ 2.06
SMC1BQ8NDV3 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC27.9■■■□□ 2.06
SMC1BQ8NDV3 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC27.9■■■□□ 2.06
SMC1BQ8NDV3 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC27.9■■■□□ 2.06
SMC1BQ8NDV3 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC27.9■■■□□ 2.06
SMC1BQ8NDV3 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC27.89■■■□□ 2.06
SMC1BQ8NDV3 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
SMC1BQ8NDV3 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
SMC1BQ8NDV3 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
SMC1BQ8NDV3 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC27.89■■■□□ 2.05
SMC1BQ8NDV3 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC27.88■■■□□ 2.05
SMC1BQ8NDV3 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC27.88■■■□□ 2.05
SMC1BQ8NDV3 NME4-202ENST00000382940 766 ntTSL 3 BASIC27.88■■■□□ 2.05
SMC1BQ8NDV3 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
SMC1BQ8NDV3 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
SMC1BQ8NDV3 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC27.88■■■□□ 2.05
SMC1BQ8NDV3 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC27.88■■■□□ 2.05
SMC1BQ8NDV3 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
SMC1BQ8NDV3 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC27.88■■■□□ 2.05
SMC1BQ8NDV3 NME4-211ENST00000620944 1193 ntTSL 2 BASIC27.88■■■□□ 2.05
SMC1BQ8NDV3 AC136469.2-201ENST00000623944 1028 ntBASIC27.88■■■□□ 2.05
SMC1BQ8NDV3 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
SMC1BQ8NDV3 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC27.87■■■□□ 2.05
SMC1BQ8NDV3 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
SMC1BQ8NDV3 EMC9-206ENST00000560403 872 ntTSL 2 BASIC27.87■■■□□ 2.05
SMC1BQ8NDV3 AC245100.8-202ENST00000629247 1058 ntBASIC27.87■■■□□ 2.05
SMC1BQ8NDV3 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC27.87■■■□□ 2.05
SMC1BQ8NDV3 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC27.86■■■□□ 2.05
SMC1BQ8NDV3 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
SMC1BQ8NDV3 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
SMC1BQ8NDV3 HES6-206ENST00000409574 738 ntTSL 2 BASIC27.86■■■□□ 2.05
SMC1BQ8NDV3 BX842568.3-201ENST00000418104 571 ntBASIC27.86■■■□□ 2.05
SMC1BQ8NDV3 AC123595.1-201ENST00000440769 1046 ntBASIC27.86■■■□□ 2.05
SMC1BQ8NDV3 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC27.86■■■□□ 2.05
SMC1BQ8NDV3 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC27.86■■■□□ 2.05
SMC1BQ8NDV3 AC066615.1-201ENST00000640911 628 ntBASIC27.86■■■□□ 2.05
SMC1BQ8NDV3 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC27.86■■■□□ 2.05
SMC1BQ8NDV3 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC27.85■■■□□ 2.05
SMC1BQ8NDV3 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC27.85■■■□□ 2.05
SMC1BQ8NDV3 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC27.85■■■□□ 2.05
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms