Protein–RNA interactions for Protein: P22518

Clk1, Dual specificity protein kinase CLK1, mousemouse

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk1P22518 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clk1P22518 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clk1P22518 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clk1P22518 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clk1P22518 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Clk1P22518 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clk1P22518 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clk1P22518 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Clk1P22518 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clk1P22518 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.68
Clk1P22518 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Clk1P22518 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clk1P22518 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clk1P22518 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Clk1P22518 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Clk1P22518 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clk1P22518 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Clk1P22518 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC19.26■□□□□ 0.67
Clk1P22518 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clk1P22518 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clk1P22518 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clk1P22518 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clk1P22518 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clk1P22518 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clk1P22518 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clk1P22518 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Clk1P22518 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clk1P22518 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clk1P22518 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clk1P22518 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Clk1P22518 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC19.25■□□□□ 0.67
Clk1P22518 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Clk1P22518 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Clk1P22518 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Clk1P22518 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clk1P22518 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clk1P22518 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clk1P22518 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Clk1P22518 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Clk1P22518 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clk1P22518 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC19.24■□□□□ 0.67
Clk1P22518 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clk1P22518 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC19.24■□□□□ 0.67
Clk1P22518 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Clk1P22518 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clk1P22518 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clk1P22518 Gm11847-201ENSMUST00000125165 1119 ntBASIC19.23■□□□□ 0.67
Clk1P22518 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC19.23■□□□□ 0.67
Clk1P22518 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clk1P22518 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
Clk1P22518 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Clk1P22518 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clk1P22518 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clk1P22518 Gm28536-201ENSMUST00000190971 1317 ntBASIC19.23■□□□□ 0.67
Clk1P22518 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC19.22■□□□□ 0.67
Clk1P22518 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clk1P22518 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Clk1P22518 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clk1P22518 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC19.22■□□□□ 0.67
Clk1P22518 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clk1P22518 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC19.22■□□□□ 0.67
Clk1P22518 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clk1P22518 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clk1P22518 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Clk1P22518 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clk1P22518 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Clk1P22518 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clk1P22518 AC153962.1-201ENSMUST00000218530 1948 ntBASIC19.21■□□□□ 0.67
Clk1P22518 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clk1P22518 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC19.2■□□□□ 0.66
Clk1P22518 Gm16464-201ENSMUST00000117815 1095 ntBASIC19.2■□□□□ 0.66
Clk1P22518 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
Clk1P22518 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clk1P22518 Gm42900-201ENSMUST00000197184 2167 ntBASIC19.2■□□□□ 0.66
Clk1P22518 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clk1P22518 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC19.2■□□□□ 0.66
Clk1P22518 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clk1P22518 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Clk1P22518 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Clk1P22518 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clk1P22518 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clk1P22518 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clk1P22518 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clk1P22518 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Clk1P22518 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clk1P22518 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clk1P22518 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clk1P22518 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clk1P22518 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clk1P22518 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clk1P22518 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Clk1P22518 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clk1P22518 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Clk1P22518 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Clk1P22518 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Clk1P22518 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Clk1P22518 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clk1P22518 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clk1P22518 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC19.18■□□□□ 0.66
Clk1P22518 Gm15043-201ENSMUST00000118843 1543 ntBASIC19.18■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms