Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 ACE-204ENST00000428043 5120 ntTSL 2 BASIC13.56□□□□□ -0.24
COL8A1P27658 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC13.56□□□□□ -0.24
COL8A1P27658 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC13.56□□□□□ -0.24
COL8A1P27658 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC13.56□□□□□ -0.24
COL8A1P27658 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC13.56□□□□□ -0.24
COL8A1P27658 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
COL8A1P27658 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC13.56□□□□□ -0.24
COL8A1P27658 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC13.56□□□□□ -0.24
COL8A1P27658 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC13.56□□□□□ -0.24
COL8A1P27658 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC13.56□□□□□ -0.24
COL8A1P27658 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC13.56□□□□□ -0.24
COL8A1P27658 PGGT1BP2-201ENST00000398621 1028 ntBASIC13.56□□□□□ -0.24
COL8A1P27658 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC13.56□□□□□ -0.24
COL8A1P27658 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC13.56□□□□□ -0.24
COL8A1P27658 AC007274.2-201ENST00000421675 662 ntBASIC13.56□□□□□ -0.24
COL8A1P27658 FGFR3P1-201ENST00000449999 601 ntBASIC13.56□□□□□ -0.24
COL8A1P27658 AC090142.2-201ENST00000483263 416 ntBASIC13.56□□□□□ -0.24
COL8A1P27658 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC13.56□□□□□ -0.24
COL8A1P27658 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC13.56□□□□□ -0.24
COL8A1P27658 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
COL8A1P27658 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC13.56□□□□□ -0.24
COL8A1P27658 AC024681.1-201ENST00000521917 487 ntBASIC13.56□□□□□ -0.24
COL8A1P27658 AC135983.4-201ENST00000564116 1262 ntBASIC13.56□□□□□ -0.24
COL8A1P27658 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC13.56□□□□□ -0.24
COL8A1P27658 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC13.56□□□□□ -0.24
COL8A1P27658 AC093813.1-201ENST00000605066 256 ntBASIC13.56□□□□□ -0.24
COL8A1P27658 AF254983.2-201ENST00000612331 135 ntBASIC13.56□□□□□ -0.24
COL8A1P27658 AC007326.2-201ENST00000624224 7579 ntBASIC13.56□□□□□ -0.24
COL8A1P27658 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC13.56□□□□□ -0.24
COL8A1P27658 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC13.56□□□□□ -0.24
COL8A1P27658 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
COL8A1P27658 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
COL8A1P27658 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
COL8A1P27658 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC13.56□□□□□ -0.24
COL8A1P27658 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC13.56□□□□□ -0.24
COL8A1P27658 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
COL8A1P27658 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
COL8A1P27658 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL8A1P27658 CYP51A1P3-201ENST00000400072 1428 ntBASIC13.56□□□□□ -0.24
COL8A1P27658 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL8A1P27658 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
COL8A1P27658 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC13.55□□□□□ -0.24
COL8A1P27658 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC13.55□□□□□ -0.24
COL8A1P27658 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL8A1P27658 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL8A1P27658 BNIP3P1-202ENST00000550043 1585 ntBASIC13.55□□□□□ -0.24
COL8A1P27658 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL8A1P27658 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL8A1P27658 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
COL8A1P27658 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL8A1P27658 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC13.55□□□□□ -0.24
COL8A1P27658 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL8A1P27658 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL8A1P27658 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC13.55□□□□□ -0.24
COL8A1P27658 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL8A1P27658 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL8A1P27658 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC13.55□□□□□ -0.24
COL8A1P27658 AC012497.1-201ENST00000429392 575 ntBASIC13.55□□□□□ -0.24
COL8A1P27658 EEF1DP4-201ENST00000446006 880 ntBASIC13.55□□□□□ -0.24
COL8A1P27658 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC13.55□□□□□ -0.24
COL8A1P27658 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC13.55□□□□□ -0.24
COL8A1P27658 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC13.55□□□□□ -0.24
COL8A1P27658 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC13.55□□□□□ -0.24
COL8A1P27658 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC13.55□□□□□ -0.24
COL8A1P27658 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC13.55□□□□□ -0.24
COL8A1P27658 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC13.55□□□□□ -0.24
COL8A1P27658 AC243562.2-201ENST00000561247 970 ntBASIC13.55□□□□□ -0.24
COL8A1P27658 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
COL8A1P27658 INO80C-210ENST00000590757 595 ntTSL 2 BASIC13.55□□□□□ -0.24
COL8A1P27658 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC13.55□□□□□ -0.24
COL8A1P27658 AP005019.2-201ENST00000615104 511 ntBASIC13.55□□□□□ -0.24
COL8A1P27658 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
COL8A1P27658 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL8A1P27658 GCK-202ENST00000345378 2421 ntTSL 2 BASIC13.55□□□□□ -0.24
COL8A1P27658 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC13.55□□□□□ -0.24
COL8A1P27658 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC13.55□□□□□ -0.24
COL8A1P27658 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC13.55□□□□□ -0.24
COL8A1P27658 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL8A1P27658 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms