Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 RPP21-221ENST00000428040 594 ntTSL 2 BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 GATD1-206ENST00000526325 756 ntTSL 5 BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 AC018529.1-201ENST00000613063 361 ntBASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
RHBDD3Q9Y3P4 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 AGAP7P-201ENST00000582299 2062 ntBASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 AGAP14-201ENST00000624701 2060 ntBASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 AC126365.1-201ENST00000578585 1514 ntBASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 AL353705.2-201ENST00000428243 662 ntBASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 GPS2P2-201ENST00000430745 888 ntBASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 CCDC74BP1-201ENST00000508880 1123 ntBASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 CALM1-205ENST00000553542 877 ntTSL 5 BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 AC003101.2-201ENST00000612557 442 ntBASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RHBDD3Q9Y3P4 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
RHBDD3Q9Y3P4 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
RHBDD3Q9Y3P4 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
RHBDD3Q9Y3P4 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
RHBDD3Q9Y3P4 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
RHBDD3Q9Y3P4 KRT8P37-201ENST00000451609 1420 ntBASIC13.71□□□□□ -0.22
RHBDD3Q9Y3P4 AC127383.1-201ENST00000444697 1800 ntBASIC13.71□□□□□ -0.22
RHBDD3Q9Y3P4 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
RHBDD3Q9Y3P4 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC13.71□□□□□ -0.22
RHBDD3Q9Y3P4 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
RHBDD3Q9Y3P4 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
RHBDD3Q9Y3P4 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
RHBDD3Q9Y3P4 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
RHBDD3Q9Y3P4 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
RHBDD3Q9Y3P4 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RHBDD3Q9Y3P4 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC13.7□□□□□ -0.22
RHBDD3Q9Y3P4 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
RHBDD3Q9Y3P4 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RHBDD3Q9Y3P4 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
RHBDD3Q9Y3P4 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms