Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 HADH-212ENST00000638621 741 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CCDC60Q8IWA6 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 STK33-217ENST00000534493 1895 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC60Q8IWA6 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 AC008741.2-201ENST00000612792 3115 ntBASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 AC007787.1-201ENST00000588095 1583 ntBASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 RPL7P3-201ENST00000441388 714 ntBASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 BNIP3P42-201ENST00000454982 569 ntBASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 RPL28-206ENST00000558752 671 ntTSL 3 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 BNIP3P29-201ENST00000598302 571 ntBASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 AC011447.5-201ENST00000616168 564 ntBASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 PFAS-212ENST00000625942 396 ntTSL 5 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC60Q8IWA6 HLA-DQB2-231ENST00000435145 2026 ntBASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms