Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC9.33□□□□□ -0.92
HSPG2P98160 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
HSPG2P98160 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC9.33□□□□□ -0.92
HSPG2P98160 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
HSPG2P98160 ALOX12P2-203ENST00000570921 1945 ntBASIC9.33□□□□□ -0.92
HSPG2P98160 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
HSPG2P98160 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC9.33□□□□□ -0.92
HSPG2P98160 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC9.33□□□□□ -0.92
HSPG2P98160 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
HSPG2P98160 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
HSPG2P98160 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
HSPG2P98160 BCAS2P2-201ENST00000425064 674 ntBASIC9.33□□□□□ -0.92
HSPG2P98160 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC9.33□□□□□ -0.92
HSPG2P98160 AC063952.3-201ENST00000467756 308 ntBASIC9.33□□□□□ -0.92
HSPG2P98160 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC9.33□□□□□ -0.92
HSPG2P98160 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC9.33□□□□□ -0.92
HSPG2P98160 CTBP2P6-201ENST00000526402 1229 ntBASIC9.33□□□□□ -0.92
HSPG2P98160 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
HSPG2P98160 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
HSPG2P98160 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
HSPG2P98160 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC9.33□□□□□ -0.92
HSPG2P98160 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
HSPG2P98160 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
HSPG2P98160 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
HSPG2P98160 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC9.33□□□□□ -0.92
HSPG2P98160 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC9.33□□□□□ -0.92
HSPG2P98160 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
HSPG2P98160 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
HSPG2P98160 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC9.33□□□□□ -0.92
HSPG2P98160 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC9.33□□□□□ -0.92
HSPG2P98160 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC9.33□□□□□ -0.92
HSPG2P98160 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC9.33□□□□□ -0.92
HSPG2P98160 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC9.33□□□□□ -0.92
HSPG2P98160 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
HSPG2P98160 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC9.33□□□□□ -0.92
HSPG2P98160 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC9.33□□□□□ -0.92
HSPG2P98160 RN7SL494P-201ENST00000461517 304 ntBASIC9.33□□□□□ -0.92
HSPG2P98160 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC9.33□□□□□ -0.92
HSPG2P98160 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC9.33□□□□□ -0.92
HSPG2P98160 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
HSPG2P98160 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
HSPG2P98160 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC9.33□□□□□ -0.92
HSPG2P98160 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC9.33□□□□□ -0.92
HSPG2P98160 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC9.33□□□□□ -0.92
HSPG2P98160 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC9.33□□□□□ -0.92
HSPG2P98160 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
HSPG2P98160 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
HSPG2P98160 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC9.33□□□□□ -0.92
HSPG2P98160 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC9.33□□□□□ -0.92
HSPG2P98160 BCL2L12P1-201ENST00000508390 733 ntBASIC9.33□□□□□ -0.92
HSPG2P98160 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC9.33□□□□□ -0.92
HSPG2P98160 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC9.33□□□□□ -0.92
HSPG2P98160 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC9.33□□□□□ -0.92
HSPG2P98160 ABHD17AP9-201ENST00000561925 548 ntBASIC9.33□□□□□ -0.92
HSPG2P98160 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC9.33□□□□□ -0.92
HSPG2P98160 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
HSPG2P98160 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
HSPG2P98160 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
HSPG2P98160 FRMPD2B-201ENST00000431305 1347 ntBASIC9.32□□□□□ -0.92
HSPG2P98160 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC9.32□□□□□ -0.92
HSPG2P98160 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC9.32□□□□□ -0.92
HSPG2P98160 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
HSPG2P98160 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC9.32□□□□□ -0.92
HSPG2P98160 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
HSPG2P98160 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC9.32□□□□□ -0.92
HSPG2P98160 AL645933.1-201ENST00000440087 609 ntBASIC9.32□□□□□ -0.92
HSPG2P98160 CCNC-217ENST00000523985 958 ntTSL 2 BASIC9.32□□□□□ -0.92
HSPG2P98160 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
HSPG2P98160 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC9.32□□□□□ -0.92
HSPG2P98160 TKT-202ENST00000423516 2075 ntTSL 2 BASIC9.32□□□□□ -0.92
HSPG2P98160 HLA-DQB1-202ENST00000399079 1501 ntBASIC9.32□□□□□ -0.92
HSPG2P98160 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC9.32□□□□□ -0.92
HSPG2P98160 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC9.32□□□□□ -0.92
HSPG2P98160 SLC9A7P1-202ENST00000556476 2239 ntBASIC9.32□□□□□ -0.92
HSPG2P98160 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
HSPG2P98160 AC106886.4-201ENST00000623557 2502 ntBASIC9.32□□□□□ -0.92
HSPG2P98160 EML3-212ENST00000494176 2901 ntTSL 2 BASIC9.32□□□□□ -0.92
HSPG2P98160 EML3-216ENST00000529309 2909 ntTSL 2 BASIC9.32□□□□□ -0.92
HSPG2P98160 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
HSPG2P98160 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC9.32□□□□□ -0.92
HSPG2P98160 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC9.32□□□□□ -0.92
HSPG2P98160 AC011462.4-201ENST00000616866 449 ntBASIC9.32□□□□□ -0.92
HSPG2P98160 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
HSPG2P98160 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
HSPG2P98160 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC9.32□□□□□ -0.92
HSPG2P98160 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC9.32□□□□□ -0.92
HSPG2P98160 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC9.32□□□□□ -0.92
HSPG2P98160 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
HSPG2P98160 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
HSPG2P98160 AP001094.4-201ENST00000579008 2176 ntBASIC9.32□□□□□ -0.92
HSPG2P98160 AC006449.5-201ENST00000610658 2098 ntBASIC9.32□□□□□ -0.92
HSPG2P98160 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC9.32□□□□□ -0.92
HSPG2P98160 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
HSPG2P98160 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC9.32□□□□□ -0.92
HSPG2P98160 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC9.32□□□□□ -0.92
HSPG2P98160 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC9.32□□□□□ -0.92
HSPG2P98160 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
HSPG2P98160 AP005212.2-201ENST00000584979 510 ntBASIC9.32□□□□□ -0.92
HSPG2P98160 AC006483.2-201ENST00000609813 515 ntBASIC9.32□□□□□ -0.92
HSPG2P98160 LINC01783-202ENST00000614408 828 ntBASIC9.32□□□□□ -0.92
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms