Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL3A1P02461 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC20.22■□□□□ 0.83
COL3A1P02461 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC20.22■□□□□ 0.83
COL3A1P02461 AC138696.2-201ENST00000607376 223 ntBASIC20.22■□□□□ 0.83
COL3A1P02461 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL3A1P02461 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
COL3A1P02461 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL3A1P02461 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC20.22■□□□□ 0.83
COL3A1P02461 AC023090.2-201ENST00000625182 2110 ntBASIC20.22■□□□□ 0.83
COL3A1P02461 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL3A1P02461 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC20.22■□□□□ 0.83
COL3A1P02461 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL3A1P02461 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL3A1P02461 CICP6-201ENST00000457191 2729 ntBASIC20.21■□□□□ 0.83
COL3A1P02461 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL3A1P02461 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL3A1P02461 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC20.21■□□□□ 0.83
COL3A1P02461 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL3A1P02461 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL3A1P02461 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL3A1P02461 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.21■□□□□ 0.83
COL3A1P02461 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
COL3A1P02461 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL3A1P02461 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL3A1P02461 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL3A1P02461 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC20.21■□□□□ 0.83
COL3A1P02461 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL3A1P02461 MIR1908-201ENST00000410394 80 ntBASIC20.21■□□□□ 0.83
COL3A1P02461 MESTP3-201ENST00000503460 968 ntBASIC20.21■□□□□ 0.83
COL3A1P02461 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL3A1P02461 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL3A1P02461 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC20.21■□□□□ 0.83
COL3A1P02461 AP006547.1-201ENST00000563435 692 ntBASIC20.21■□□□□ 0.83
COL3A1P02461 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
COL3A1P02461 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL3A1P02461 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
COL3A1P02461 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC20.21■□□□□ 0.83
COL3A1P02461 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL3A1P02461 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC20.21■□□□□ 0.83
COL3A1P02461 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC20.21■□□□□ 0.83
COL3A1P02461 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL3A1P02461 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL3A1P02461 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC20.2■□□□□ 0.83
COL3A1P02461 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
COL3A1P02461 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL3A1P02461 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL3A1P02461 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC20.2■□□□□ 0.82
COL3A1P02461 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL3A1P02461 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC20.2■□□□□ 0.82
COL3A1P02461 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL3A1P02461 SNX21-203ENST00000372541 771 ntTSL 2 BASIC20.2■□□□□ 0.82
COL3A1P02461 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC20.2■□□□□ 0.82
COL3A1P02461 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL3A1P02461 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
COL3A1P02461 AC126177.1-201ENST00000547829 2218 ntBASIC20.2■□□□□ 0.82
COL3A1P02461 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL3A1P02461 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
COL3A1P02461 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL3A1P02461 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC20.2■□□□□ 0.82
COL3A1P02461 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL3A1P02461 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL3A1P02461 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL3A1P02461 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
COL3A1P02461 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL3A1P02461 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL3A1P02461 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL3A1P02461 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
COL3A1P02461 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL3A1P02461 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL3A1P02461 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC20.19■□□□□ 0.82
COL3A1P02461 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL3A1P02461 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL3A1P02461 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
COL3A1P02461 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL3A1P02461 RGS5-214ENST00000429865 754 ntTSL 3 BASIC20.19■□□□□ 0.82
COL3A1P02461 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
COL3A1P02461 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC20.19■□□□□ 0.82
COL3A1P02461 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL3A1P02461 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL3A1P02461 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
COL3A1P02461 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC20.19■□□□□ 0.82
COL3A1P02461 RN7SL713P-201ENST00000582127 302 ntBASIC20.19■□□□□ 0.82
COL3A1P02461 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC20.19■□□□□ 0.82
COL3A1P02461 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL3A1P02461 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
COL3A1P02461 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL3A1P02461 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL3A1P02461 WASH3P-207ENST00000560956 1394 ntBASIC20.19■□□□□ 0.82
COL3A1P02461 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
COL3A1P02461 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL3A1P02461 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL3A1P02461 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL3A1P02461 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC20.19■□□□□ 0.82
COL3A1P02461 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC20.19■□□□□ 0.82
COL3A1P02461 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL3A1P02461 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL3A1P02461 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
COL3A1P02461 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC20.19■□□□□ 0.82
COL3A1P02461 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
COL3A1P02461 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms