Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDKL5O76039 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
CDKL5O76039 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDKL5O76039 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC18.17■□□□□ 0.5
CDKL5O76039 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDKL5O76039 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDKL5O76039 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CDKL5O76039 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDKL5O76039 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDKL5O76039 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDKL5O76039 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDKL5O76039 MYB-242ENST00000618728 3545 ntTSL 5 BASIC18.16■□□□□ 0.5
CDKL5O76039 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDKL5O76039 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CDKL5O76039 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CDKL5O76039 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDKL5O76039 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CDKL5O76039 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDKL5O76039 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CDKL5O76039 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDKL5O76039 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDKL5O76039 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CDKL5O76039 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDKL5O76039 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CDKL5O76039 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDKL5O76039 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC18.16■□□□□ 0.5
CDKL5O76039 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC18.16■□□□□ 0.5
CDKL5O76039 AC092183.1-201ENST00000469884 875 ntBASIC18.16■□□□□ 0.5
CDKL5O76039 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC18.16■□□□□ 0.5
CDKL5O76039 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CDKL5O76039 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDKL5O76039 AC092337.1-201ENST00000568699 1129 ntBASIC18.16■□□□□ 0.5
CDKL5O76039 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC18.16■□□□□ 0.5
CDKL5O76039 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
CDKL5O76039 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDKL5O76039 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDKL5O76039 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC18.16■□□□□ 0.5
CDKL5O76039 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDKL5O76039 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CDKL5O76039 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDKL5O76039 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDKL5O76039 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC18.16■□□□□ 0.5
CDKL5O76039 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC18.15■□□□□ 0.5
CDKL5O76039 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDKL5O76039 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDKL5O76039 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDKL5O76039 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDKL5O76039 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDKL5O76039 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
CDKL5O76039 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC18.15■□□□□ 0.5
CDKL5O76039 AL121723.1-201ENST00000445194 1519 ntBASIC18.15■□□□□ 0.5
CDKL5O76039 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CDKL5O76039 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDKL5O76039 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDKL5O76039 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDKL5O76039 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC18.15■□□□□ 0.5
CDKL5O76039 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.15■□□□□ 0.5
CDKL5O76039 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.15■□□□□ 0.5
CDKL5O76039 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC18.15■□□□□ 0.5
CDKL5O76039 RAB35-202ENST00000534951 939 ntTSL 2 BASIC18.15■□□□□ 0.5
CDKL5O76039 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC18.15■□□□□ 0.5
CDKL5O76039 UBL5-208ENST00000593087 320 ntTSL 3 BASIC18.15■□□□□ 0.5
CDKL5O76039 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC18.15■□□□□ 0.5
CDKL5O76039 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDKL5O76039 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CDKL5O76039 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDKL5O76039 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDKL5O76039 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDKL5O76039 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CDKL5O76039 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDKL5O76039 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDKL5O76039 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDKL5O76039 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CDKL5O76039 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
CDKL5O76039 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
CDKL5O76039 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CDKL5O76039 MFF-204ENST00000353339 2186 ntTSL 5 BASIC18.14■□□□□ 0.49
CDKL5O76039 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
CDKL5O76039 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CDKL5O76039 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
CDKL5O76039 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CDKL5O76039 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDKL5O76039 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDKL5O76039 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC18.14■□□□□ 0.49
CDKL5O76039 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDKL5O76039 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
CDKL5O76039 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDKL5O76039 PKIG-203ENST00000372887 769 ntTSL 3 BASIC18.14■□□□□ 0.49
CDKL5O76039 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
CDKL5O76039 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC18.14■□□□□ 0.49
CDKL5O76039 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC18.14■□□□□ 0.49
CDKL5O76039 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CDKL5O76039 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDKL5O76039 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.14■□□□□ 0.49
CDKL5O76039 PRR29-204ENST00000577953 565 ntTSL 4 BASIC18.14■□□□□ 0.49
CDKL5O76039 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.14■□□□□ 0.49
CDKL5O76039 AC004461.2-201ENST00000629517 803 ntBASIC18.14■□□□□ 0.49
CDKL5O76039 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC18.14■□□□□ 0.49
CDKL5O76039 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC18.14■□□□□ 0.49
CDKL5O76039 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms