Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC11O43248 AC024909.3-201ENST00000611513 2257 ntBASIC15.82■□□□□ 0.12
HOXC11O43248 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.82■□□□□ 0.12
HOXC11O43248 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC11O43248 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC15.82■□□□□ 0.12
HOXC11O43248 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC11O43248 AC006001.1-201ENST00000325130 474 ntBASIC15.82■□□□□ 0.12
HOXC11O43248 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC11O43248 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC11O43248 ACTBP8-201ENST00000403258 1108 ntBASIC15.82■□□□□ 0.12
HOXC11O43248 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.82■□□□□ 0.12
HOXC11O43248 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC15.82■□□□□ 0.12
HOXC11O43248 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.82■□□□□ 0.12
HOXC11O43248 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC15.82■□□□□ 0.12
HOXC11O43248 AC114812.1-204ENST00000449669 728 ntBASIC15.82■□□□□ 0.12
HOXC11O43248 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC15.82■□□□□ 0.12
HOXC11O43248 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC15.82■□□□□ 0.12
HOXC11O43248 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC15.82■□□□□ 0.12
HOXC11O43248 AHRR-211ENST00000515206 462 ntTSL 5 BASIC15.82■□□□□ 0.12
HOXC11O43248 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.82■□□□□ 0.12
HOXC11O43248 DUX4L45-201ENST00000566406 1057 ntBASIC15.82■□□□□ 0.12
HOXC11O43248 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC15.82■□□□□ 0.12
HOXC11O43248 MIR4525-201ENST00000580000 75 ntBASIC15.82■□□□□ 0.12
HOXC11O43248 AC132938.4-201ENST00000623835 848 ntBASIC15.82■□□□□ 0.12
HOXC11O43248 PRSS30P-206ENST00000641773 873 ntBASIC15.82■□□□□ 0.12
HOXC11O43248 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.82■□□□□ 0.12
HOXC11O43248 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC11O43248 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC11O43248 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.82■□□□□ 0.12
HOXC11O43248 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC11O43248 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.82■□□□□ 0.12
HOXC11O43248 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC11O43248 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.82■□□□□ 0.12
HOXC11O43248 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC15.82■□□□□ 0.12
HOXC11O43248 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC11O43248 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC11O43248 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC11O43248 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC11O43248 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC11O43248 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.81■□□□□ 0.12
HOXC11O43248 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC11O43248 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC11O43248 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC11O43248 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC11O43248 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC11O43248 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
HOXC11O43248 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC11O43248 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC11O43248 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC11O43248 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC11O43248 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC11O43248 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC11O43248 TPO-206ENST00000382269 1155 ntTSL 5 BASIC15.81■□□□□ 0.12
HOXC11O43248 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC11O43248 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.81■□□□□ 0.12
HOXC11O43248 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC15.81■□□□□ 0.12
HOXC11O43248 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.81■□□□□ 0.12
HOXC11O43248 KLF2P2-201ENST00000416807 1039 ntBASIC15.81■□□□□ 0.12
HOXC11O43248 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC11O43248 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC15.81■□□□□ 0.12
HOXC11O43248 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC11O43248 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC11O43248 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.81■□□□□ 0.12
HOXC11O43248 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC11O43248 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC11O43248 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.81■□□□□ 0.12
HOXC11O43248 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.81■□□□□ 0.12
HOXC11O43248 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.81■□□□□ 0.12
HOXC11O43248 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC11O43248 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.81■□□□□ 0.12
HOXC11O43248 MIR4538-201ENST00000581377 78 ntBASIC15.81■□□□□ 0.12
HOXC11O43248 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC15.81■□□□□ 0.12
HOXC11O43248 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC15.81■□□□□ 0.12
HOXC11O43248 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
HOXC11O43248 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC11O43248 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC11O43248 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC11O43248 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC15.8■□□□□ 0.12
HOXC11O43248 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC11O43248 AC084364.1-201ENST00000551967 1556 ntBASIC15.8■□□□□ 0.12
HOXC11O43248 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.8■□□□□ 0.12
HOXC11O43248 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC11O43248 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.8■□□□□ 0.12
HOXC11O43248 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC11O43248 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC15.8■□□□□ 0.12
HOXC11O43248 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC11O43248 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC11O43248 RNU1-114P-201ENST00000365297 166 ntBASIC15.8■□□□□ 0.12
HOXC11O43248 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
HOXC11O43248 AL645937.2-201ENST00000396808 931 ntBASIC15.8■□□□□ 0.12
HOXC11O43248 FAM197Y7-201ENST00000432892 766 ntBASIC15.8■□□□□ 0.12
HOXC11O43248 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC15.8■□□□□ 0.12
HOXC11O43248 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC15.8■□□□□ 0.12
HOXC11O43248 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC11O43248 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC11O43248 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC15.8■□□□□ 0.12
HOXC11O43248 AC023310.1-201ENST00000554836 735 ntBASIC15.8■□□□□ 0.12
HOXC11O43248 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC15.8■□□□□ 0.12
HOXC11O43248 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC15.8■□□□□ 0.12
HOXC11O43248 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 240 ms