Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC18.69■□□□□ 0.58
COL4A1P02462 KRTAP19-9P-201ENST00000421795 191 ntBASIC18.69■□□□□ 0.58
COL4A1P02462 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A1P02462 MDH2-205ENST00000461263 648 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A1P02462 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC18.69■□□□□ 0.58
COL4A1P02462 AC022616.1-201ENST00000518688 554 ntBASIC18.69■□□□□ 0.58
COL4A1P02462 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A1P02462 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A1P02462 AC013355.1-201ENST00000562625 723 ntBASIC18.69■□□□□ 0.58
COL4A1P02462 AC009955.4-201ENST00000597192 544 ntBASIC18.69■□□□□ 0.58
COL4A1P02462 AC106872.11-201ENST00000605838 421 ntBASIC18.69■□□□□ 0.58
COL4A1P02462 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC18.69■□□□□ 0.58
COL4A1P02462 AC138649.2-201ENST00000615886 705 ntBASIC18.69■□□□□ 0.58
COL4A1P02462 AC244157.2-201ENST00000616239 1006 ntBASIC18.69■□□□□ 0.58
COL4A1P02462 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A1P02462 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A1P02462 PCBP2-OT1-201ENST00000634357 590 ntBASIC18.69■□□□□ 0.58
COL4A1P02462 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A1P02462 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A1P02462 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A1P02462 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A1P02462 AL513523.2-202ENST00000427283 2040 ntBASIC18.69■□□□□ 0.58
COL4A1P02462 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A1P02462 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A1P02462 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A1P02462 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A1P02462 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A1P02462 AL365203.3-201ENST00000609742 2057 ntBASIC18.69■□□□□ 0.58
COL4A1P02462 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A1P02462 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A1P02462 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A1P02462 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.69■□□□□ 0.58
COL4A1P02462 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A1P02462 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A1P02462 RN7SKP230-201ENST00000365642 335 ntBASIC18.69■□□□□ 0.58
COL4A1P02462 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC18.69■□□□□ 0.58
COL4A1P02462 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC18.69■□□□□ 0.58
COL4A1P02462 RNMTL1P1-201ENST00000454103 560 ntBASIC18.69■□□□□ 0.58
COL4A1P02462 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC18.69■□□□□ 0.58
COL4A1P02462 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC18.69■□□□□ 0.58
COL4A1P02462 AC091812.3-201ENST00000621362 345 ntBASIC18.69■□□□□ 0.58
COL4A1P02462 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A1P02462 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC18.69■□□□□ 0.58
COL4A1P02462 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A1P02462 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A1P02462 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A1P02462 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A1P02462 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC18.68■□□□□ 0.58
COL4A1P02462 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC18.68■□□□□ 0.58
COL4A1P02462 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.68■□□□□ 0.58
COL4A1P02462 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A1P02462 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A1P02462 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A1P02462 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A1P02462 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A1P02462 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A1P02462 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A1P02462 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A1P02462 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A1P02462 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC18.68■□□□□ 0.58
COL4A1P02462 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A1P02462 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
COL4A1P02462 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC18.68■□□□□ 0.58
COL4A1P02462 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC18.68■□□□□ 0.58
COL4A1P02462 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A1P02462 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
COL4A1P02462 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A1P02462 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A1P02462 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A1P02462 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A1P02462 AP000593.2-201ENST00000542775 1433 ntBASIC18.67■□□□□ 0.58
COL4A1P02462 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A1P02462 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A1P02462 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A1P02462 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A1P02462 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A1P02462 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
COL4A1P02462 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A1P02462 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A1P02462 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A1P02462 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A1P02462 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC18.67■□□□□ 0.58
COL4A1P02462 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A1P02462 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A1P02462 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A1P02462 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A1P02462 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A1P02462 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A1P02462 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A1P02462 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A1P02462 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC18.67■□□□□ 0.58
COL4A1P02462 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC18.67■□□□□ 0.58
COL4A1P02462 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A1P02462 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.67■□□□□ 0.58
COL4A1P02462 AC020910.5-201ENST00000623668 1865 ntBASIC18.67■□□□□ 0.58
COL4A1P02462 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC18.66■□□□□ 0.58
COL4A1P02462 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC18.66■□□□□ 0.58
COL4A1P02462 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A1P02462 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
COL4A1P02462 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms