Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 GNRHR2-203ENST00000581100 1187 ntBASIC15.18■□□□□ 0.02
LMX1AQ8TE12 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 TBCB-211ENST00000589996 724 ntTSL 3 BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 AC010328.2-201ENST00000597698 1111 ntBASIC15.18■□□□□ 0.02
LMX1AQ8TE12 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 AP005019.2-201ENST00000615104 511 ntBASIC15.18■□□□□ 0.02
LMX1AQ8TE12 BX539320.1-201ENST00000623759 877 ntBASIC15.18■□□□□ 0.02
LMX1AQ8TE12 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 TUBB1P2-201ENST00000422712 1306 ntBASIC15.17■□□□□ 0.02
LMX1AQ8TE12 TUBB1P1-201ENST00000503144 1300 ntBASIC15.17■□□□□ 0.02
LMX1AQ8TE12 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 PGGT1BP2-201ENST00000398621 1028 ntBASIC15.17■□□□□ 0.02
LMX1AQ8TE12 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 GAPDHP40-201ENST00000505218 1006 ntBASIC15.17■□□□□ 0.02
LMX1AQ8TE12 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15.17■□□□□ 0.02
LMX1AQ8TE12 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LMX1AQ8TE12 WAC-202ENST00000347934 2839 ntTSL 5 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.16■□□□□ 0.02
LMX1AQ8TE12 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms