Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 MTDHP5-201ENST00000598980 586 ntBASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 POLL-206ENST00000370172 2308 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC54Q8NEL0 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 AP3S2-216ENST00000617003 1561 ntBASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 KLK8-202ENST00000320838 456 ntTSL 5 BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 AC004832.2-201ENST00000426397 482 ntBASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 AL353705.2-201ENST00000428243 662 ntBASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 SLC25A1P1-201ENST00000528351 927 ntBASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CCDC54Q8NEL0 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
CCDC54Q8NEL0 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC54Q8NEL0 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC54Q8NEL0 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC54Q8NEL0 API5-202ENST00000420461 2009 ntTSL 2 BASIC13.71□□□□□ -0.22
CCDC54Q8NEL0 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC54Q8NEL0 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.22
CCDC54Q8NEL0 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC54Q8NEL0 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC54Q8NEL0 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.22
CCDC54Q8NEL0 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
CCDC54Q8NEL0 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC54Q8NEL0 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC54Q8NEL0 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC54Q8NEL0 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC54Q8NEL0 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC54Q8NEL0 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC54Q8NEL0 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC54Q8NEL0 AC112693.3-201ENST00000624819 1983 ntBASIC13.71□□□□□ -0.22
CCDC54Q8NEL0 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC54Q8NEL0 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC54Q8NEL0 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 UXT-AS1-201ENST00000590504 1525 ntBASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 AL592309.1-201ENST00000443127 649 ntBASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 NMU-202ENST00000505262 693 ntTSL 3 BASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 KRT8P48-201ENST00000515599 1220 ntBASIC13.7□□□□□ -0.22
CCDC54Q8NEL0 HNRNPUP1-201ENST00000554987 333 ntBASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms