Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
CXCL1P09341 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC12.2□□□□□ -0.46
CXCL1P09341 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
CXCL1P09341 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC12.2□□□□□ -0.46
CXCL1P09341 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC12.2□□□□□ -0.46
CXCL1P09341 AC113367.3-201ENST00000508316 1912 ntBASIC12.2□□□□□ -0.46
CXCL1P09341 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
CXCL1P09341 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 PPIH-202ENST00000372549 327 ntTSL 3 BASIC12.2□□□□□ -0.46
CXCL1P09341 FAM8A3P-201ENST00000427218 844 ntBASIC12.2□□□□□ -0.46
CXCL1P09341 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC12.2□□□□□ -0.46
CXCL1P09341 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC12.2□□□□□ -0.46
CXCL1P09341 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 RBSN-204ENST00000449050 903 ntTSL 2 BASIC12.2□□□□□ -0.46
CXCL1P09341 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC12.2□□□□□ -0.46
CXCL1P09341 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC12.2□□□□□ -0.46
CXCL1P09341 CYB561-217ENST00000582997 877 ntTSL 5 BASIC12.2□□□□□ -0.46
CXCL1P09341 RBM42-202ENST00000586618 771 ntTSL 3 BASIC12.2□□□□□ -0.46
CXCL1P09341 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC12.2□□□□□ -0.46
CXCL1P09341 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
CXCL1P09341 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
CXCL1P09341 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
CXCL1P09341 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
CXCL1P09341 CICP16-201ENST00000502609 2813 ntBASIC12.2□□□□□ -0.46
CXCL1P09341 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC12.2□□□□□ -0.46
CXCL1P09341 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC12.2□□□□□ -0.46
CXCL1P09341 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC12.2□□□□□ -0.46
CXCL1P09341 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC12.2□□□□□ -0.46
CXCL1P09341 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC12.2□□□□□ -0.46
CXCL1P09341 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC12.2□□□□□ -0.46
CXCL1P09341 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC12.2□□□□□ -0.46
CXCL1P09341 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
CXCL1P09341 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
CXCL1P09341 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
CXCL1P09341 AC131009.4-201ENST00000624048 1740 ntBASIC12.2□□□□□ -0.46
CXCL1P09341 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
CXCL1P09341 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC12.2□□□□□ -0.46
CXCL1P09341 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC12.2□□□□□ -0.46
CXCL1P09341 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC12.19□□□□□ -0.46
CXCL1P09341 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC12.19□□□□□ -0.46
CXCL1P09341 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC12.19□□□□□ -0.46
CXCL1P09341 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC12.19□□□□□ -0.46
CXCL1P09341 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 FES-203ENST00000394302 2133 ntTSL 5 BASIC12.19□□□□□ -0.46
CXCL1P09341 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC12.19□□□□□ -0.46
CXCL1P09341 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
CXCL1P09341 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC12.19□□□□□ -0.46
CXCL1P09341 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC12.19□□□□□ -0.46
CXCL1P09341 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
CXCL1P09341 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC12.19□□□□□ -0.46
CXCL1P09341 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 IGHV3-47-201ENST00000425060 335 ntBASIC12.19□□□□□ -0.46
CXCL1P09341 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC12.19□□□□□ -0.46
CXCL1P09341 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC12.19□□□□□ -0.46
CXCL1P09341 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC12.19□□□□□ -0.46
CXCL1P09341 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
CXCL1P09341 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
CXCL1P09341 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC12.19□□□□□ -0.46
CXCL1P09341 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC12.19□□□□□ -0.46
CXCL1P09341 AL139424.1-201ENST00000607572 797 ntBASIC12.19□□□□□ -0.46
CXCL1P09341 AP001350.2-201ENST00000625104 1094 ntBASIC12.19□□□□□ -0.46
CXCL1P09341 AL121956.5-201ENST00000625261 221 ntBASIC12.19□□□□□ -0.46
CXCL1P09341 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC12.19□□□□□ -0.46
CXCL1P09341 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC12.19□□□□□ -0.46
CXCL1P09341 STRN-202ENST00000379213 2254 ntTSL 5 BASIC12.19□□□□□ -0.46
CXCL1P09341 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
CXCL1P09341 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms