Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 RAC2-202ENST00000401529 569 ntTSL 4 BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 CMC2-214ENST00000565925 640 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC9Q9Y3X0 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 LTB4R2-202ENST00000528054 3092 ntBASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 FAM8A4P-201ENST00000435433 1213 ntBASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 OARD1-204ENST00000464633 717 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 AC021723.1-201ENST00000486306 515 ntBASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 AC097359.3-201ENST00000603982 1210 ntBASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 AL645939.5-201ENST00000606834 243 ntBASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC9Q9Y3X0 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 AC234782.1-201ENST00000451950 919 ntBASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
CCDC9Q9Y3X0 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC9Q9Y3X0 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC9Q9Y3X0 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC9Q9Y3X0 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC20.64■□□□□ 0.9
CCDC9Q9Y3X0 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.9
CCDC9Q9Y3X0 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC20.64■□□□□ 0.9
CCDC9Q9Y3X0 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC20.64■□□□□ 0.9
CCDC9Q9Y3X0 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC9Q9Y3X0 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC9Q9Y3X0 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC20.64■□□□□ 0.9
CCDC9Q9Y3X0 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC9Q9Y3X0 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
CCDC9Q9Y3X0 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
CCDC9Q9Y3X0 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC9Q9Y3X0 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
CCDC9Q9Y3X0 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC9Q9Y3X0 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC9Q9Y3X0 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC9Q9Y3X0 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC9Q9Y3X0 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC20.64■□□□□ 0.89
CCDC9Q9Y3X0 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
CCDC9Q9Y3X0 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC9Q9Y3X0 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC20.64■□□□□ 0.89
CCDC9Q9Y3X0 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC20.64■□□□□ 0.89
CCDC9Q9Y3X0 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms