Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 AC010507.1-201ENST00000633895 436 ntBASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 VPS51-217ENST00000639871 243 ntTSL 5 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 TET3-201ENST00000305799 5174 ntTSL 5 BASIC13.6□□□□□ -0.23
CHMP1AQ9HD42 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 AC087481.3-201ENST00000602886 1894 ntBASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 AL137784.3-201ENST00000623858 2288 ntBASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 DDT-204ENST00000404092 805 ntTSL 3 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 IGLL3P-201ENST00000412472 434 ntBASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 AC079781.3-201ENST00000449110 356 ntBASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 HS6ST1P1-201ENST00000481504 1234 ntBASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 RPL28-209ENST00000560055 670 ntTSL 3 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 CALM3-211ENST00000598871 561 ntTSL 4 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 AL049840.3-201ENST00000602669 611 ntBASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 MIR7706-201ENST00000613747 67 ntBASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 AC079781.5-202ENST00000641784 3743 ntBASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 NIN-202ENST00000324330 4364 ntTSL 5 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CHMP1AQ9HD42 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.23
CHMP1AQ9HD42 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.23
CHMP1AQ9HD42 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
CHMP1AQ9HD42 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
CHMP1AQ9HD42 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 CSF3-203ENST00000394148 622 ntTSL 3 BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 AC026396.1-201ENST00000419388 421 ntBASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 AC009947.1-201ENST00000444350 727 ntBASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms