Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SCN4AP35499 AC084364.1-201ENST00000551967 1556 ntBASIC18.03■□□□□ 0.48
SCN4AP35499 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN4AP35499 AC090502.4-201ENST00000551714 1386 ntBASIC18.03■□□□□ 0.48
SCN4AP35499 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SCN4AP35499 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN4AP35499 AMT-239ENST00000636865 1914 ntTSL 5 BASIC18.03■□□□□ 0.48
SCN4AP35499 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN4AP35499 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SCN4AP35499 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN4AP35499 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SCN4AP35499 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC18.03■□□□□ 0.48
SCN4AP35499 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN4AP35499 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN4AP35499 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SCN4AP35499 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SCN4AP35499 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC18.03■□□□□ 0.48
SCN4AP35499 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SCN4AP35499 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SCN4AP35499 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SCN4AP35499 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SCN4AP35499 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SCN4AP35499 AL357563.1-201ENST00000404728 395 ntBASIC18.02■□□□□ 0.48
SCN4AP35499 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SCN4AP35499 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC18.02■□□□□ 0.48
SCN4AP35499 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC18.02■□□□□ 0.48
SCN4AP35499 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC18.02■□□□□ 0.48
SCN4AP35499 HPN-206ENST00000597419 1212 ntTSL 5 BASIC18.02■□□□□ 0.48
SCN4AP35499 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC18.02■□□□□ 0.48
SCN4AP35499 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SCN4AP35499 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SCN4AP35499 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SCN4AP35499 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC18.02■□□□□ 0.48
SCN4AP35499 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
SCN4AP35499 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.02■□□□□ 0.48
SCN4AP35499 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.48
SCN4AP35499 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.02■□□□□ 0.48
SCN4AP35499 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SCN4AP35499 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC18.02■□□□□ 0.48
SCN4AP35499 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SCN4AP35499 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.47
SCN4AP35499 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC18.02■□□□□ 0.47
SCN4AP35499 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
SCN4AP35499 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC18.02■□□□□ 0.47
SCN4AP35499 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
SCN4AP35499 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SCN4AP35499 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
SCN4AP35499 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
SCN4AP35499 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
SCN4AP35499 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SCN4AP35499 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SCN4AP35499 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SCN4AP35499 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.02■□□□□ 0.47
SCN4AP35499 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.01■□□□□ 0.47
SCN4AP35499 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
SCN4AP35499 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SCN4AP35499 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC18.01■□□□□ 0.47
SCN4AP35499 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SCN4AP35499 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC18.01■□□□□ 0.47
SCN4AP35499 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SCN4AP35499 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SCN4AP35499 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SCN4AP35499 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SCN4AP35499 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC18.01■□□□□ 0.47
SCN4AP35499 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC18.01■□□□□ 0.47
SCN4AP35499 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SCN4AP35499 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
SCN4AP35499 FRMPD2B-201ENST00000431305 1347 ntBASIC18.01■□□□□ 0.47
SCN4AP35499 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
SCN4AP35499 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.01■□□□□ 0.47
SCN4AP35499 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
SCN4AP35499 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SCN4AP35499 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SCN4AP35499 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SCN4AP35499 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC18■□□□□ 0.47
SCN4AP35499 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SCN4AP35499 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SCN4AP35499 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
SCN4AP35499 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC18■□□□□ 0.47
SCN4AP35499 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC18■□□□□ 0.47
SCN4AP35499 DNM1P51-201ENST00000558149 522 ntBASIC18■□□□□ 0.47
SCN4AP35499 MIR4522-201ENST00000584932 87 ntBASIC18■□□□□ 0.47
SCN4AP35499 AP003392.6-201ENST00000607709 325 ntBASIC18■□□□□ 0.47
SCN4AP35499 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC18■□□□□ 0.47
SCN4AP35499 AC107464.3-201ENST00000609172 737 ntBASIC18■□□□□ 0.47
SCN4AP35499 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC18■□□□□ 0.47
SCN4AP35499 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SCN4AP35499 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18■□□□□ 0.47
SCN4AP35499 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
SCN4AP35499 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SCN4AP35499 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SCN4AP35499 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC18■□□□□ 0.47
SCN4AP35499 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SCN4AP35499 AC009093.2-202ENST00000620513 2079 ntBASIC18■□□□□ 0.47
SCN4AP35499 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SCN4AP35499 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18■□□□□ 0.47
SCN4AP35499 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
SCN4AP35499 AL583805.1-201ENST00000391389 531 ntBASIC18■□□□□ 0.47
SCN4AP35499 RPL8P2-201ENST00000430538 502 ntBASIC18■□□□□ 0.47
SCN4AP35499 KLF2P1-201ENST00000447438 1042 ntBASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms