Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC17.86■□□□□ 0.45
SMARCA1P28370 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SMARCA1P28370 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC17.86■□□□□ 0.45
SMARCA1P28370 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SMARCA1P28370 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SMARCA1P28370 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
SMARCA1P28370 AC007787.1-201ENST00000588095 1583 ntBASIC17.86■□□□□ 0.45
SMARCA1P28370 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SMARCA1P28370 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
SMARCA1P28370 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
SMARCA1P28370 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.86■□□□□ 0.45
SMARCA1P28370 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SMARCA1P28370 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMARCA1P28370 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC17.85■□□□□ 0.45
SMARCA1P28370 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMARCA1P28370 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.85■□□□□ 0.45
SMARCA1P28370 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMARCA1P28370 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMARCA1P28370 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMARCA1P28370 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMARCA1P28370 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SMARCA1P28370 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMARCA1P28370 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SMARCA1P28370 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMARCA1P28370 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMARCA1P28370 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMARCA1P28370 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMARCA1P28370 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SMARCA1P28370 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SMARCA1P28370 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC17.85■□□□□ 0.45
SMARCA1P28370 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC17.85■□□□□ 0.45
SMARCA1P28370 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMARCA1P28370 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC17.85■□□□□ 0.45
SMARCA1P28370 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC17.85■□□□□ 0.45
SMARCA1P28370 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SMARCA1P28370 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
SMARCA1P28370 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.85■□□□□ 0.45
SMARCA1P28370 AC009486.1-201ENST00000569860 813 ntBASIC17.85■□□□□ 0.45
SMARCA1P28370 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17.85■□□□□ 0.45
SMARCA1P28370 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC17.85■□□□□ 0.45
SMARCA1P28370 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SMARCA1P28370 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SMARCA1P28370 AC136621.1-201ENST00000624017 2304 ntBASIC17.85■□□□□ 0.45
SMARCA1P28370 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.85■□□□□ 0.45
SMARCA1P28370 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC17.85■□□□□ 0.45
SMARCA1P28370 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
SMARCA1P28370 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMARCA1P28370 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMARCA1P28370 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SMARCA1P28370 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SMARCA1P28370 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.84■□□□□ 0.45
SMARCA1P28370 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMARCA1P28370 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
SMARCA1P28370 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.84■□□□□ 0.45
SMARCA1P28370 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMARCA1P28370 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SMARCA1P28370 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMARCA1P28370 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMARCA1P28370 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMARCA1P28370 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SMARCA1P28370 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMARCA1P28370 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMARCA1P28370 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SMARCA1P28370 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC17.84■□□□□ 0.45
SMARCA1P28370 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SMARCA1P28370 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SMARCA1P28370 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC17.84■□□□□ 0.45
SMARCA1P28370 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMARCA1P28370 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SMARCA1P28370 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC17.84■□□□□ 0.45
SMARCA1P28370 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.84■□□□□ 0.45
SMARCA1P28370 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMARCA1P28370 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
SMARCA1P28370 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMARCA1P28370 B9D1-203ENST00000395615 805 ntTSL 3 BASIC17.84■□□□□ 0.45
SMARCA1P28370 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC17.84■□□□□ 0.45
SMARCA1P28370 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC17.84■□□□□ 0.45
SMARCA1P28370 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC17.84■□□□□ 0.45
SMARCA1P28370 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
SMARCA1P28370 RBM7-207ENST00000544582 692 ntTSL 3 BASIC17.84■□□□□ 0.45
SMARCA1P28370 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC17.84■□□□□ 0.45
SMARCA1P28370 AC015936.2-201ENST00000593177 259 ntBASIC17.84■□□□□ 0.45
SMARCA1P28370 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC17.84■□□□□ 0.45
SMARCA1P28370 AC010319.3-201ENST00000597028 470 ntBASIC17.84■□□□□ 0.45
SMARCA1P28370 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC17.84■□□□□ 0.45
SMARCA1P28370 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17.84■□□□□ 0.45
SMARCA1P28370 AP005019.2-201ENST00000615104 511 ntBASIC17.84■□□□□ 0.45
SMARCA1P28370 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
SMARCA1P28370 IGHV3-72-202ENST00000621503 303 ntBASIC17.84■□□□□ 0.45
SMARCA1P28370 BX539320.1-201ENST00000623759 877 ntBASIC17.84■□□□□ 0.45
SMARCA1P28370 STRN-202ENST00000379213 2254 ntTSL 5 BASIC17.84■□□□□ 0.45
SMARCA1P28370 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMARCA1P28370 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SMARCA1P28370 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC17.84■□□□□ 0.45
SMARCA1P28370 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SMARCA1P28370 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SMARCA1P28370 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SMARCA1P28370 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
SMARCA1P28370 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
SMARCA1P28370 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms