Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL5A3P25940 AL353770.1-201ENST00000614915 403 ntBASIC19.22■□□□□ 0.67
COL5A3P25940 MIR7845-201ENST00000618396 99 ntBASIC19.22■□□□□ 0.67
COL5A3P25940 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL5A3P25940 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL5A3P25940 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL5A3P25940 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC19.22■□□□□ 0.67
COL5A3P25940 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL5A3P25940 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
COL5A3P25940 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL5A3P25940 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC19.22■□□□□ 0.67
COL5A3P25940 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC19.22■□□□□ 0.67
COL5A3P25940 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC19.22■□□□□ 0.67
COL5A3P25940 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL5A3P25940 FAM90A7P-201ENST00000382628 1395 ntBASIC19.22■□□□□ 0.67
COL5A3P25940 FAM90A23P-201ENST00000400136 1395 ntBASIC19.22■□□□□ 0.67
COL5A3P25940 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.22■□□□□ 0.67
COL5A3P25940 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL5A3P25940 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
COL5A3P25940 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL5A3P25940 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL5A3P25940 TUBB8P8-201ENST00000458717 1058 ntBASIC19.22■□□□□ 0.67
COL5A3P25940 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC19.22■□□□□ 0.67
COL5A3P25940 AC019193.1-201ENST00000506678 823 ntBASIC19.22■□□□□ 0.67
COL5A3P25940 AC242376.1-201ENST00000559033 726 ntBASIC19.22■□□□□ 0.67
COL5A3P25940 AC005962.1-201ENST00000584100 773 ntBASIC19.22■□□□□ 0.67
COL5A3P25940 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC19.22■□□□□ 0.67
COL5A3P25940 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC19.22■□□□□ 0.67
COL5A3P25940 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A3P25940 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC19.21■□□□□ 0.67
COL5A3P25940 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A3P25940 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A3P25940 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A3P25940 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A3P25940 REXO1L5P-201ENST00000622260 2098 ntBASIC19.21■□□□□ 0.67
COL5A3P25940 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC19.21■□□□□ 0.67
COL5A3P25940 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A3P25940 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A3P25940 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A3P25940 KRT18P36-201ENST00000411618 1276 ntBASIC19.21■□□□□ 0.67
COL5A3P25940 AL355334.1-201ENST00000417713 215 ntBASIC19.21■□□□□ 0.67
COL5A3P25940 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC19.21■□□□□ 0.67
COL5A3P25940 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A3P25940 CDC23-208ENST00000505120 455 ntTSL 3 BASIC19.21■□□□□ 0.67
COL5A3P25940 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A3P25940 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A3P25940 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A3P25940 SLC9A7P1-202ENST00000556476 2239 ntBASIC19.21■□□□□ 0.67
COL5A3P25940 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A3P25940 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC19.21■□□□□ 0.67
COL5A3P25940 MVK-214ENST00000629016 1591 ntTSL 5 BASIC19.21■□□□□ 0.67
COL5A3P25940 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A3P25940 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL5A3P25940 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.21■□□□□ 0.67
COL5A3P25940 MBLAC2-202ENST00000514906 1936 ntBASIC19.21■□□□□ 0.66
COL5A3P25940 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A3P25940 ACE-203ENST00000413513 2237 ntTSL 2 BASIC19.2■□□□□ 0.66
COL5A3P25940 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A3P25940 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC19.2■□□□□ 0.66
COL5A3P25940 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A3P25940 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
COL5A3P25940 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A3P25940 LBH-202ENST00000401506 485 ntTSL 3 BASIC19.2■□□□□ 0.66
COL5A3P25940 SERF2-209ENST00000409646 559 ntTSL 4 BASIC19.2■□□□□ 0.66
COL5A3P25940 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC19.2■□□□□ 0.66
COL5A3P25940 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC19.2■□□□□ 0.66
COL5A3P25940 IGLV3-15-201ENST00000518356 244 ntBASIC19.2■□□□□ 0.66
COL5A3P25940 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC19.2■□□□□ 0.66
COL5A3P25940 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A3P25940 RTN3P1-201ENST00000536295 711 ntBASIC19.2■□□□□ 0.66
COL5A3P25940 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A3P25940 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
COL5A3P25940 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A3P25940 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
COL5A3P25940 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC19.2■□□□□ 0.66
COL5A3P25940 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A3P25940 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
COL5A3P25940 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC19.2■□□□□ 0.66
COL5A3P25940 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
COL5A3P25940 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A3P25940 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A3P25940 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A3P25940 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A3P25940 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A3P25940 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A3P25940 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
COL5A3P25940 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
COL5A3P25940 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A3P25940 CMC1-204ENST00000423894 549 ntTSL 2 BASIC19.2■□□□□ 0.66
COL5A3P25940 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL5A3P25940 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC19.2■□□□□ 0.66
COL5A3P25940 NOC2LP1-201ENST00000450578 752 ntBASIC19.2■□□□□ 0.66
COL5A3P25940 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC19.2■□□□□ 0.66
COL5A3P25940 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC19.2■□□□□ 0.66
COL5A3P25940 AL157813.1-201ENST00000612996 587 ntBASIC19.2■□□□□ 0.66
COL5A3P25940 RN7SL736P-201ENST00000613111 269 ntBASIC19.2■□□□□ 0.66
COL5A3P25940 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL5A3P25940 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL5A3P25940 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
COL5A3P25940 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms