Protein–RNA interactions for Protein: P46736

BRCC3, Lys-63-specific deubiquitinase BRCC36, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3P46736 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.62■□□□□ 0.25
BRCC3P46736 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
BRCC3P46736 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
BRCC3P46736 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
BRCC3P46736 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
BRCC3P46736 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
BRCC3P46736 AC093525.8-201ENST00000624099 1342 ntBASIC16.62■□□□□ 0.25
BRCC3P46736 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
BRCC3P46736 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.62■□□□□ 0.25
BRCC3P46736 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
BRCC3P46736 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.62■□□□□ 0.25
BRCC3P46736 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
BRCC3P46736 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
BRCC3P46736 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
BRCC3P46736 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.62■□□□□ 0.25
BRCC3P46736 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC16.62■□□□□ 0.25
BRCC3P46736 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
BRCC3P46736 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
BRCC3P46736 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.62■□□□□ 0.25
BRCC3P46736 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.62■□□□□ 0.25
BRCC3P46736 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
BRCC3P46736 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.61■□□□□ 0.25
BRCC3P46736 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
BRCC3P46736 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.61■□□□□ 0.25
BRCC3P46736 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.61■□□□□ 0.25
BRCC3P46736 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.61■□□□□ 0.25
BRCC3P46736 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.61■□□□□ 0.25
BRCC3P46736 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.61■□□□□ 0.25
BRCC3P46736 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC16.61■□□□□ 0.25
BRCC3P46736 KLF2P4-201ENST00000451959 1225 ntBASIC16.61■□□□□ 0.25
BRCC3P46736 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC16.61■□□□□ 0.25
BRCC3P46736 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC16.61■□□□□ 0.25
BRCC3P46736 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC16.61■□□□□ 0.25
BRCC3P46736 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC16.61■□□□□ 0.25
BRCC3P46736 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC16.61■□□□□ 0.25
BRCC3P46736 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 AC025181.2-201ENST00000606994 802 ntBASIC16.61■□□□□ 0.25
BRCC3P46736 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.61■□□□□ 0.25
BRCC3P46736 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC16.61■□□□□ 0.25
BRCC3P46736 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC16.61■□□□□ 0.25
BRCC3P46736 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.61■□□□□ 0.25
BRCC3P46736 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.61■□□□□ 0.25
BRCC3P46736 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.61■□□□□ 0.25
BRCC3P46736 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC16.61■□□□□ 0.25
BRCC3P46736 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCC3P46736 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCC3P46736 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCC3P46736 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BRCC3P46736 AL391005.1-201ENST00000623953 2435 ntBASIC16.6■□□□□ 0.25
BRCC3P46736 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
BRCC3P46736 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCC3P46736 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BRCC3P46736 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BRCC3P46736 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
BRCC3P46736 CICP13-201ENST00000422015 2789 ntBASIC16.6■□□□□ 0.25
BRCC3P46736 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCC3P46736 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCC3P46736 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BRCC3P46736 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCC3P46736 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCC3P46736 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCC3P46736 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.6■□□□□ 0.25
BRCC3P46736 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BRCC3P46736 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC16.6■□□□□ 0.25
BRCC3P46736 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC16.6■□□□□ 0.25
BRCC3P46736 MFF-223ENST00000524634 647 ntTSL 2 BASIC16.6■□□□□ 0.25
BRCC3P46736 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC16.6■□□□□ 0.25
BRCC3P46736 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC16.6■□□□□ 0.25
BRCC3P46736 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BRCC3P46736 APRT-204ENST00000563655 709 ntTSL 5 BASIC16.6■□□□□ 0.25
BRCC3P46736 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC16.6■□□□□ 0.25
BRCC3P46736 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BRCC3P46736 AC244669.2-201ENST00000612320 853 ntBASIC16.6■□□□□ 0.25
BRCC3P46736 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC16.6■□□□□ 0.25
BRCC3P46736 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.6■□□□□ 0.25
BRCC3P46736 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCC3P46736 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCC3P46736 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
BRCC3P46736 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms