Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SLC6A4P31645 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SLC6A4P31645 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
SLC6A4P31645 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.04■□□□□ 0.16
SLC6A4P31645 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
SLC6A4P31645 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SLC6A4P31645 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SLC6A4P31645 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.04■□□□□ 0.16
SLC6A4P31645 C1QBPP1-201ENST00000400117 770 ntBASIC16.04■□□□□ 0.16
SLC6A4P31645 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC16.04■□□□□ 0.16
SLC6A4P31645 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.04■□□□□ 0.16
SLC6A4P31645 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SLC6A4P31645 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SLC6A4P31645 TTTY23B-201ENST00000442790 549 ntBASIC16.04■□□□□ 0.16
SLC6A4P31645 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.04■□□□□ 0.16
SLC6A4P31645 GAPDHP40-201ENST00000505218 1006 ntBASIC16.04■□□□□ 0.16
SLC6A4P31645 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.04■□□□□ 0.16
SLC6A4P31645 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.04■□□□□ 0.16
SLC6A4P31645 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.04■□□□□ 0.16
SLC6A4P31645 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.04■□□□□ 0.16
SLC6A4P31645 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.04■□□□□ 0.16
SLC6A4P31645 AC107373.2-201ENST00000607735 490 ntBASIC16.04■□□□□ 0.16
SLC6A4P31645 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SLC6A4P31645 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
SLC6A4P31645 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SLC6A4P31645 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SLC6A4P31645 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
SLC6A4P31645 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.04■□□□□ 0.16
SLC6A4P31645 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SLC6A4P31645 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SLC6A4P31645 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SLC6A4P31645 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
SLC6A4P31645 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SLC6A4P31645 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.04■□□□□ 0.16
SLC6A4P31645 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.04■□□□□ 0.16
SLC6A4P31645 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SLC6A4P31645 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SLC6A4P31645 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.04■□□□□ 0.16
SLC6A4P31645 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SLC6A4P31645 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SLC6A4P31645 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.03■□□□□ 0.16
SLC6A4P31645 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC6A4P31645 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC6A4P31645 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SLC6A4P31645 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC6A4P31645 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC6A4P31645 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SLC6A4P31645 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC6A4P31645 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SLC6A4P31645 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.03■□□□□ 0.16
SLC6A4P31645 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SLC6A4P31645 PAUPAR-201ENST00000630360 2965 ntBASIC16.03■□□□□ 0.16
SLC6A4P31645 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC6A4P31645 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.03■□□□□ 0.16
SLC6A4P31645 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SLC6A4P31645 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SLC6A4P31645 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
SLC6A4P31645 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.03■□□□□ 0.16
SLC6A4P31645 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC6A4P31645 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
SLC6A4P31645 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
SLC6A4P31645 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.03■□□□□ 0.16
SLC6A4P31645 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
SLC6A4P31645 MXI1-205ENST00000393134 889 ntTSL 2 BASIC16.03■□□□□ 0.16
SLC6A4P31645 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.03■□□□□ 0.16
SLC6A4P31645 SOCS2P1-201ENST00000417727 557 ntBASIC16.03■□□□□ 0.16
SLC6A4P31645 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.03■□□□□ 0.16
SLC6A4P31645 AL162726.2-201ENST00000438986 1017 ntBASIC16.03■□□□□ 0.16
SLC6A4P31645 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SLC6A4P31645 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SLC6A4P31645 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
SLC6A4P31645 AC025181.2-201ENST00000606994 802 ntBASIC16.03■□□□□ 0.16
SLC6A4P31645 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.03■□□□□ 0.16
SLC6A4P31645 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SLC6A4P31645 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC6A4P31645 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC6A4P31645 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SLC6A4P31645 AC084364.1-201ENST00000551967 1556 ntBASIC16.03■□□□□ 0.16
SLC6A4P31645 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC6A4P31645 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.03■□□□□ 0.16
SLC6A4P31645 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.03■□□□□ 0.16
SLC6A4P31645 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SLC6A4P31645 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SLC6A4P31645 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SLC6A4P31645 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.03■□□□□ 0.16
SLC6A4P31645 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SLC6A4P31645 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SLC6A4P31645 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SLC6A4P31645 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SLC6A4P31645 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SLC6A4P31645 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.02■□□□□ 0.16
SLC6A4P31645 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.02■□□□□ 0.16
SLC6A4P31645 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SLC6A4P31645 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SLC6A4P31645 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.02■□□□□ 0.16
SLC6A4P31645 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.02■□□□□ 0.16
SLC6A4P31645 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SLC6A4P31645 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SLC6A4P31645 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
SLC6A4P31645 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms