Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 AGAP7P-201ENST00000582299 2062 ntBASIC16.25■□□□□ 0.19
PCDH9Q9HC56 AGAP14-201ENST00000624701 2060 ntBASIC16.25■□□□□ 0.19
PCDH9Q9HC56 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH9Q9HC56 AL035456.1-201ENST00000456064 1369 ntBASIC16.25■□□□□ 0.19
PCDH9Q9HC56 LINC01101-201ENST00000622953 1884 ntBASIC16.25■□□□□ 0.19
PCDH9Q9HC56 CICP24-201ENST00000605464 2705 ntBASIC16.25■□□□□ 0.19
PCDH9Q9HC56 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 TUBB3P1-201ENST00000405796 1332 ntBASIC16.24■□□□□ 0.19
PCDH9Q9HC56 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 AC063926.3-201ENST00000624734 5658 ntBASIC16.24■□□□□ 0.19
PCDH9Q9HC56 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 AC148477.4-201ENST00000613430 1793 ntBASIC16.24■□□□□ 0.19
PCDH9Q9HC56 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 AC015911.4-201ENST00000588022 1070 ntBASIC16.24■□□□□ 0.19
PCDH9Q9HC56 RN7SL828P-201ENST00000607615 303 ntBASIC16.24■□□□□ 0.19
PCDH9Q9HC56 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH9Q9HC56 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms